View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_low_20 (Length: 213)
Name: NF19633_low_20
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 8906697 - 8906873
Alignment:
| Q |
21 |
tacaacttgcttatcaaataaaaaacaagagagaatgaaagacgtgattatgattcgataaaaatcaaaataaagaagccgttggtaatagcactaaacg |
120 |
Q |
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| T |
8906697 |
tacaacttgcttatcaaatacaaaacaaaagagaatgaaagacgtgattatgattcgataaaaatcaaaataaa-aagccgttggtaatagcactaaatg |
8906795 |
T |
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| Q |
121 |
nnnnnnnnnt-attatcattcaatattgtaaattcaattagtacatttatttgatgcgtc-tcatctaaacttgaata |
196 |
Q |
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| T |
8906796 |
aaaaaaaaatgattatcattcaatattctaaattcaattaatacatttatttgatgcgtcttcatctaaatttgaata |
8906873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 8909493 - 8909665
Alignment:
| Q |
21 |
tacaacttgcttatcaaataaaaaacaagagagaatgaaagacgtgattatgattcgataaaaatcaaaataaagaagccgttggtaatagcactaaacg |
120 |
Q |
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| T |
8909493 |
tacagcttgcttattaaataaaaaacaaaagagaatgaaagacatgattaggaatcaataaaaatcaaaataaagaagctgctagcaatagcactaaa-- |
8909590 |
T |
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| Q |
121 |
nnnnnnnnntattatcattcaatattgtaaattcaattagtacatttatttgatgcgtc-tcatctaaacttgaatatatt |
200 |
Q |
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| T |
8909591 |
------taatattatcattcaaccttgtgaatataattagtgcatttattggatgcgtcttcatctaaacttgaatatatt |
8909665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 8903737 - 8903804
Alignment:
| Q |
134 |
atcattcaatattgtaaattcaattagtacatttatttgatgcgt-ctcatctaaacttgaatatatt |
200 |
Q |
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| T |
8903737 |
atcattcaatcttgtaaattcaattagtacatttattggatacgtattaatctaaacttgaatatatt |
8903804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 8903389 - 8903438
Alignment:
| Q |
43 |
aaacaagagagaatgaaagacgtgattatgattcgataaaaatcaaaata |
92 |
Q |
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| T |
8903389 |
aaacaaaagagaatgaaagatgtgattaggaatcgataaaaatcaaaata |
8903438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 8903480 - 8903516
Alignment:
| Q |
134 |
atcattcaatattgtaaattcaattagtacatttatt |
170 |
Q |
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| T |
8903480 |
atcattcaatcttgtaaattcaattagtacatttatt |
8903516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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