View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_low_4 (Length: 422)
Name: NF19633_low_4
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 217 - 399
Target Start/End: Original strand, 7389796 - 7389979
Alignment:
| Q |
217 |
caaaacaaaacaatacataatctatctatctatctagtattataatcaaatcgagaatagtgtgtaaacccttattccccaa-ctctaatattcaattta |
315 |
Q |
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| T |
7389796 |
caaaacaaaacaatacataatctatctatctatctagtattataatcaaattgagaatagtgtgtaaacccttattccccaaactctaatattcaattta |
7389895 |
T |
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| Q |
316 |
tctattttgcctttcatttttgccactttatttcaattttgccctcccaccaaacttcttcataattaagttataaattgtatg |
399 |
Q |
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| T |
7389896 |
tctattttgcctttcatttttgccactttatttcaattttgccctcccaccaaacttcttcataattaagttataaattgtatg |
7389979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 7389574 - 7389730
Alignment:
| Q |
49 |
tcgttaatggtggattataacttataagattagtgtaccaccattggcgaaaaataaaagtgtatttattgaaggnnnnnnnngtattttaaagaagca- |
147 |
Q |
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| T |
7389574 |
tcgttaatggtgggttataacttataagaatagtgtaccaccattggggaaaaataaaagtgtatttattgaa-gaaaaaaaagtattttaaagaagcat |
7389672 |
T |
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| Q |
148 |
---cgcacttcacgtatcccacaattttttaatattaaaatattaaaatgtaatgtta |
202 |
Q |
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| T |
7389673 |
gttcccacttcacgtatcacataattttttaatattaaaatgttgaaatgtaatgtta |
7389730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 15102562 - 15102452
Alignment:
| Q |
289 |
tattccccaactctaatattcaatttatctattttgcctttcatttttgccactttatttcaattttgccctcccaccaaacttcttcataattaagtta |
388 |
Q |
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| T |
15102562 |
tatttcccaaccctaatacccaatttgtctattttaccttttatttttgtcacctcatttcaatttttccct-ccactaaactcctccatcattaagtta |
15102464 |
T |
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| Q |
389 |
taaattgtatgc |
400 |
Q |
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| T |
15102463 |
ttgattgtatgc |
15102452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 9491892 - 9491855
Alignment:
| Q |
162 |
cccacaattttttaatattaaaatattaaaatgtaatg |
199 |
Q |
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| T |
9491892 |
cccacatttttttaatattaaaaaattaaaatgtaatg |
9491855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 199
Target Start/End: Complemental strand, 34382603 - 34382572
Alignment:
| Q |
168 |
attttttaatattaaaatattaaaatgtaatg |
199 |
Q |
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| T |
34382603 |
attttttaatattaaaatattaaaatgtaatg |
34382572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 953680 - 953645
Alignment:
| Q |
162 |
cccacaattttttaatattaaaatattaaaatgtaa |
197 |
Q |
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| T |
953680 |
cccacaatattttaatattaaaatattaaaatgtaa |
953645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 45141427 - 45141399
Alignment:
| Q |
170 |
tttttaatattaaaatattaaaatgtaat |
198 |
Q |
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| T |
45141427 |
tttttaatattaaaatattaaaatgtaat |
45141399 |
T |
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