View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19633_low_5 (Length: 398)
Name: NF19633_low_5
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 51 - 384
Target Start/End: Complemental strand, 22364591 - 22364259
Alignment:
| Q |
51 |
aagagtttgtttgaattgtgaaaatcttgaaacttatgtgtatttaaacaaacttatgaaggnnnnnnngttccaccccacgataatattcgatcattta |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
22364591 |
aagagtttgtttgaattgtgaaaatcttgaaacttatgtgtatctaaacaaacttatgaaggaaaaaaa-ttccaccccacgataatattagatcattta |
22364493 |
T |
|
| Q |
151 |
caatgtacaacactccattacataaaccggtcatgcaatattttgcatggggtccgtatttttattaagtgatcatgcaattgtatctcagctctaagac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364492 |
caatgtacaacactccattacataaaccgatcatgcaatagtttgcatggggtccgtatttttattaagtgatcatgcaattgtatctcagctctaagac |
22364393 |
T |
|
| Q |
251 |
atactccttttcttttctttcttcaaaccgtaggtttcaattgtttggatggcttggaatgaataccatcattacaaacacatttctcatgtatttctat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364392 |
atactccttttcttttctttcttcaaactgtaggtttcaattgtttggatggcttggaatgaataccatcattacaaacacatttctcatgtatttctat |
22364293 |
T |
|
| Q |
351 |
attattcaaagaccatcatcatttatcccctatg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
22364292 |
attattcaaagaccatcatcatttatcccctatg |
22364259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University