View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_low_6 (Length: 387)
Name: NF19633_low_6
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 182 - 378
Target Start/End: Original strand, 56239932 - 56240128
Alignment:
| Q |
182 |
ctgtgatagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaaacctaagtcacaaaaatgtatcttgtgcatctcaaaagatg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56239932 |
ctgtgatagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaaacctaagtcacaaaaatgtatcttgtgcatctcaaaagatg |
56240031 |
T |
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| Q |
282 |
caaaacgaggcaagtgtgataccgatgcttcccccacaattgccttttgtttttgctgtagttccccatttataatatattcccatttcttctgtgc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240032 |
caaaacgaggcaagtgtgataccgatgcttcccccacaattgccttttgtttttgctgtagttccccatttataatatattcccatttcttctgtgc |
56240128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 188 - 378
Target Start/End: Original strand, 23946339 - 23946529
Alignment:
| Q |
188 |
tagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaaacctaagtcacaaaaatgtatcttgtgcatctcaaaagatgcaaaac |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23946339 |
tagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaagcctaagtcacaaaaatgtatcttgtgcatctcaaaagatgcaaagc |
23946438 |
T |
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| Q |
288 |
gaggcaagtgtgataccgatgcttcccccacaattgccttttgtttttgctgtagttccccatttataatatattcccatttcttctgtgc |
378 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23946439 |
gaggcaagtgtgatacagatgcttcccctacaattgccttttgtttctgctgtagttccccatttatagtatattcccatttcttctgtgc |
23946529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 56239767 - 56239870
Alignment:
| Q |
17 |
agttttgccttttcacttgagaggcattgtactattgtaaaataggagaacctcaccaaacttccctttcaaaattaccatgagacaaatttcataagca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56239767 |
agttttgccttttcacttgagaggcattgtactattgtaaaataggagaacctcaccaaacttccctttcaaaattaccatgagacaaatttcataagca |
56239866 |
T |
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| Q |
117 |
gtgc |
120 |
Q |
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|||| |
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| T |
56239867 |
gtgc |
56239870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 23946174 - 23946276
Alignment:
| Q |
17 |
agttttgccttttcacttgagaggcattgtactattgtaaaataggagaacctca-ccaaacttccctttcaaaattaccatgagacaaatttcataagc |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
23946174 |
agtttcgccttttcacttgagaggcattgtactattgaaaaataggagaacctcagccaaacttctctttc--aattaccatgagacaaatttcataagc |
23946271 |
T |
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| Q |
116 |
agtgc |
120 |
Q |
| |
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||||| |
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| T |
23946272 |
agtgc |
23946276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 188 - 378
Target Start/End: Complemental strand, 16106602 - 16106412
Alignment:
| Q |
188 |
tagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaaacctaagtcacaaaaatgtatcttgtgcatctcaaaagatgcaaaac |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
16106602 |
tagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaagcctaaatcacaaaaatgtatcttgtgcatctcaaaagatgcaaagc |
16106503 |
T |
|
| Q |
288 |
gaggcaagtgtgataccgatgcttcccccacaattgccttttgtttttgctgtagttccccatttataatatattcccatttcttctgtgc |
378 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16106502 |
gaggcaagtgtgatacagatgcttcccctacaattgccttttgtttctgctgtagttccccatttataatatattcccatttcttctgtgc |
16106412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 16106767 - 16106665
Alignment:
| Q |
17 |
agttttgccttttcacttgagaggcattgtactattgtaaaataggagaacctca-ccaaacttccctttcaaaattaccatgagacaaatttcataagc |
115 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
16106767 |
agtttttccttttcacttgagaggcattgtactattgaaaaataggagaacctcagccaaacttctctttc--aattaccatgagacaaacttcataagc |
16106670 |
T |
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| Q |
116 |
agtgc |
120 |
Q |
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||||| |
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| T |
16106669 |
agtgc |
16106665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 184 - 378
Target Start/End: Complemental strand, 16625010 - 16624816
Alignment:
| Q |
184 |
gtgatagataaaagaatgtacctgatgacaataaaggtatccagcaccaagccgaaaacctaagtcacaaaaatgtatcttgtgcatctcaaaagatgca |
283 |
Q |
| |
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|||| ||| ||||||| ||||||||||||||||||||||| ||||||| || |||| | || ||||||||| |||||||||||||||||| ||||| |
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| T |
16625010 |
gtgacagaaaaaagaaagtacctgatgacaataaaggtatgcagcacctagttgaaagcttatatcacaaaaacgtatcttgtgcatctcaacagatgtg |
16624911 |
T |
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| Q |
284 |
aaacgaggcaagtgtgataccgatgcttcccccacaattgccttttgtttttgctgtagttccccatttataatatattcccatttcttctgtgc |
378 |
Q |
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||||| ||||||||||| || ||||||||||| | | |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16624910 |
aaacggggcaagtgtgacacagatgcttccccaaggactgccttttgtttcttctgtagttctccatttataatatattcccatttcttctgtgc |
16624816 |
T |
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