View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19634_high_2 (Length: 292)

Name: NF19634_high_2
Description: NF19634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19634_high_2
NF19634_high_2
[»] chr7 (18 HSPs)
chr7 (19-252)||(45164955-45165188)
chr7 (41-258)||(6335822-6336039)
chr7 (187-241)||(17504123-17504177)
chr7 (187-241)||(17549037-17549091)
chr7 (149-232)||(39931122-39931205)
chr7 (190-250)||(18767921-18767981)
chr7 (80-233)||(25018775-25018928)
chr7 (190-258)||(45993081-45993148)
chr7 (150-240)||(17056052-17056142)
chr7 (190-240)||(33795924-33795974)
chr7 (192-237)||(34104003-34104048)
chr7 (190-250)||(18671683-18671743)
chr7 (193-237)||(19544972-19545016)
chr7 (80-240)||(22819174-22819334)
chr7 (191-258)||(13553752-13553819)
chr7 (190-249)||(34457725-34457784)
chr7 (198-242)||(12308690-12308734)
chr7 (83-127)||(29557846-29557890)
[»] chr4 (25 HSPs)
chr4 (19-255)||(19162573-19162809)
chr4 (19-252)||(40688577-40688810)
chr4 (41-258)||(7098987-7099204)
chr4 (83-258)||(54685115-54685290)
chr4 (190-258)||(8935579-8935647)
chr4 (190-258)||(29553307-29553375)
chr4 (190-258)||(19114941-19115009)
chr4 (190-258)||(23657802-23657870)
chr4 (190-258)||(49925834-49925902)
chr4 (191-250)||(4524194-4524253)
chr4 (80-238)||(5789549-5789707)
chr4 (55-124)||(38296345-38296414)
chr4 (152-232)||(55725235-55725315)
chr4 (199-258)||(19648214-19648273)
chr4 (187-240)||(48805501-48805554)
chr4 (143-219)||(4551336-4551412)
chr4 (190-258)||(20396087-20396155)
chr4 (84-124)||(29328238-29328278)
chr4 (146-232)||(9690953-9691039)
chr4 (188-250)||(26694441-26694503)
chr4 (146-224)||(48312633-48312711)
chr4 (187-240)||(9777893-9777946)
chr4 (191-232)||(42778769-42778810)
chr4 (190-258)||(10562900-10562968)
chr4 (146-238)||(46146202-46146294)
[»] chr5 (19 HSPs)
chr5 (19-252)||(36256289-36256520)
chr5 (101-167)||(18896145-18896211)
chr5 (190-258)||(22094817-22094885)
chr5 (154-232)||(26262962-26263040)
chr5 (152-258)||(41590601-41590707)
chr5 (189-242)||(27325285-27325338)
chr5 (190-250)||(38357980-38358040)
chr5 (191-230)||(380434-380473)
chr5 (83-258)||(33170163-33170338)
chr5 (152-258)||(4297838-4297944)
chr5 (190-232)||(20208286-20208328)
chr5 (160-238)||(31642036-31642114)
chr5 (146-232)||(42039228-42039314)
chr5 (190-263)||(19513032-19513105)
chr5 (194-255)||(31864749-31864810)
chr5 (191-232)||(34338415-34338456)
chr5 (190-250)||(6866877-6866937)
chr5 (146-258)||(15862200-15862312)
chr5 (198-258)||(25856999-25857059)
[»] chr2 (20 HSPs)
chr2 (20-252)||(2207219-2207451)
chr2 (19-252)||(13416182-13416415)
chr2 (164-251)||(6727319-6727406)
chr2 (80-233)||(43310789-43310942)
chr2 (71-231)||(10689087-10689246)
chr2 (190-258)||(15018182-15018250)
chr2 (149-233)||(26146745-26146829)
chr2 (53-139)||(11028494-11028580)
chr2 (190-250)||(28400117-28400177)
chr2 (191-258)||(9668574-9668641)
chr2 (51-126)||(44028648-44028723)
chr2 (128-170)||(6725088-6725130)
chr2 (190-250)||(35488350-35488410)
chr2 (191-242)||(22725007-22725058)
chr2 (82-124)||(33036166-33036208)
chr2 (191-232)||(1380613-1380654)
chr2 (193-258)||(11234049-11234114)
chr2 (190-258)||(11196856-11196924)
chr2 (191-219)||(32191609-32191637)
chr2 (192-224)||(37445632-37445664)
[»] chr8 (11 HSPs)
chr8 (83-252)||(4310302-4310471)
chr8 (192-249)||(12134841-12134898)
chr8 (146-224)||(38046897-38046975)
chr8 (190-250)||(6901422-6901482)
chr8 (55-258)||(36492886-36493089)
chr8 (190-255)||(17659339-17659404)
chr8 (82-139)||(36157777-36157834)
chr8 (190-258)||(36157659-36157727)
chr8 (190-250)||(44082579-44082639)
chr8 (197-258)||(20824804-20824865)
chr8 (193-258)||(43249363-43249427)
[»] chr3 (18 HSPs)
chr3 (19-251)||(8130463-8130696)
chr3 (152-233)||(52250653-52250734)
chr3 (190-250)||(36709423-36709483)
chr3 (190-250)||(45684689-45684749)
chr3 (48-258)||(16179452-16179662)
chr3 (82-124)||(30188429-30188471)
chr3 (190-250)||(21740090-21740150)
chr3 (152-223)||(48930266-48930337)
chr3 (152-234)||(6825351-6825433)
chr3 (187-233)||(7164030-7164076)
chr3 (193-242)||(5342782-5342831)
chr3 (82-139)||(23819188-23819245)
chr3 (188-249)||(42675004-42675064)
chr3 (80-124)||(7164129-7164173)
chr3 (190-250)||(14864032-14864092)
chr3 (190-250)||(24926255-24926315)
chr3 (194-258)||(43121238-43121302)
chr3 (80-124)||(52250582-52250626)
[»] chr6 (24 HSPs)
chr6 (89-258)||(15602829-15602998)
chr6 (190-258)||(503099-503167)
chr6 (190-258)||(8264728-8264796)
chr6 (197-255)||(19257407-19257465)
chr6 (191-258)||(13086044-13086111)
chr6 (190-258)||(5085593-5085661)
chr6 (190-258)||(19256145-19256213)
chr6 (190-250)||(23065613-23065673)
chr6 (152-238)||(10362658-10362744)
chr6 (146-258)||(32186188-32186300)
chr6 (190-258)||(33640423-33640490)
chr6 (146-260)||(19350447-19350561)
chr6 (150-240)||(29056042-29056132)
chr6 (190-255)||(11060429-11060494)
chr6 (190-258)||(17078757-17078825)
chr6 (190-258)||(18051016-18051084)
chr6 (146-242)||(18588870-18588966)
chr6 (190-250)||(33805293-33805353)
chr6 (51-242)||(7956099-7956289)
chr6 (146-232)||(26514255-26514341)
chr6 (197-238)||(13938244-13938285)
chr6 (197-238)||(18682148-18682189)
chr6 (190-250)||(11469082-11469141)
chr6 (146-230)||(25350755-25350839)
[»] scaffold0024 (1 HSPs)
scaffold0024 (89-258)||(86667-86836)
[»] chr1 (15 HSPs)
chr1 (190-258)||(25504561-25504629)
chr1 (82-182)||(27393408-27393508)
chr1 (190-258)||(39430782-39430850)
chr1 (191-258)||(49264532-49264599)
chr1 (150-240)||(22191309-22191399)
chr1 (193-258)||(20796173-20796238)
chr1 (82-139)||(28097425-28097482)
chr1 (84-240)||(21405360-21405516)
chr1 (150-240)||(3074268-3074358)
chr1 (176-258)||(5809086-5809168)
chr1 (93-139)||(20717561-20717606)
chr1 (52-126)||(39430914-39430988)
chr1 (187-221)||(45270783-45270817)
chr1 (86-126)||(33260156-33260196)
chr1 (86-126)||(33280315-33280355)
[»] scaffold0912 (1 HSPs)
scaffold0912 (190-258)||(2440-2508)
[»] scaffold0026 (1 HSPs)
scaffold0026 (143-232)||(67611-67700)
[»] scaffold0007 (1 HSPs)
scaffold0007 (190-258)||(182620-182688)
[»] scaffold0061 (1 HSPs)
scaffold0061 (152-234)||(55191-55273)
[»] scaffold0017 (1 HSPs)
scaffold0017 (152-234)||(143361-143443)
[»] scaffold1809 (1 HSPs)
scaffold1809 (89-138)||(1265-1314)
[»] scaffold0179 (2 HSPs)
scaffold0179 (190-258)||(8037-8105)
scaffold0179 (190-258)||(12971-13039)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 45164955 - 45165188
Alignment:
Q  19 atcttgggtgggttggcagagagtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtgg 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |  ||||||||||||||||||||||||||||||| ||||||    
T  45164955 atcttgggtgggttggcagagagtttgtatgagaaaggagtatggtggtttaggagttaggcggttgagggagtttaatgaggcgttgttagggaagtgg 45165054  T
Q  119 tgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtg 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  45165055 tgttggagattacttgttgatcgtggagggttgtggtatggggtgttggttgctagatatggtgttagggatgggaggttggaggatggaggccggagtg 45165154  T
Q  219 gttctttttggtggcaggaggttggtaggattag 252  Q
    |||||||||||||| |||||||||||||||||||    
T  45165155 gttctttttggtggaaggaggttggtaggattag 45165188  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 6335822 - 6336039
Alignment:
Q  41 gtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatc 140  Q
    |||||| ||| ||||||| | || || ||||||||| |   |||| ||||||| |||||||| ||||| || || |||||||| |||||| | || |||     
T  6335822 gtttgtttgaaaaaggagtacggggggttaggagttaggcagttgcgggagttcaatgaggcattgttgggtaaatggtgttgaagattattagtagata 6335921  T
Q  141 gtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    | |||||||| |||||| |||||||||||||| | ||||||||  | ||||||||||||||||||||||||| |||||||||| ||||||||  ||||||    
T  6335922 gaggagggttatggtatcgggtgttggttgctaggtatggtgtgcgcgatgggaggttggaggatgggggccagagtggttctatttggtggacggaggt 6336021  T
Q  241 tggtaggattagggatgg 258  Q
    | ||||||||||||||||    
T  6336022 tcgtaggattagggatgg 6336039  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 17504123 - 17504177
Alignment:
Q  187 ggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggtt 241  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  17504123 ggatgggaggttggaggatgggggccggagtggttctttgtggtggaaggaggtt 17504177  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 17549091 - 17549037
Alignment:
Q  187 ggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggtt 241  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  17549091 ggatgggaggttggaggatgggggccggagtggttctttgtggtggaaggaggtt 17549037  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 39931122 - 39931205
Alignment:
Q  149 ttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||||| |||||||||||| ||| | ||||||||   ||||||| ||||||||||||||||||||||| |||||| |||||||    
T  39931122 ttgtggtgtagggtgttggtggctaggtatggtgtggaggatgggcggttggaggatgggggccggagttgttcttgttggtgg 39931205  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 18767981 - 18767921
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||||||||| |||||| ||||||| |||||| |||||||||    
T  18767981 tgggaggttggaggtggggggccggagtgtttctttgtggtggcgggaggtaggtaggatt 18767921  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 25018775 - 25018928
Alignment:
Q  80 aggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggag--ggttgtggtatagggtgttggttgctggata 177  Q
    |||||||||||||||||||  ||||||||| |||| ||||||||| | ||| ||| |||  | ||||  | || ||||||||||||||||| ||  ||||    
T  25018775 aggttgagggagtttaatgttgcgttgttaagaaaatggtgttggcgttta-ttggtgaa-gaggagtagcttatggtatagggtgttggtggcaagata 25018872  T
Q  178 tggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggc 233  Q
    |||||    || |||||||||||||| |||||| || |||||||||| ||||||||    
T  25018873 tggtgaggaggctgggaggttggaggttgggggtcgaagtggttcttcttggtggc 25018928  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 45993148 - 45993081
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||| |||||| || ||||||||||||||    
T  45993148 tgggaggttggaggttgggg-ccggagttgttcttcttggtggcgggaggtggggaggattagggatgg 45993081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 17056142 - 17056052
Alignment:
Q  150 tgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    ||||||||||||||||||| ||  | |||||||    |||||||||||||| || |||||||||||||| |||||  |||||| |||||||    
T  17056142 tgtggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaaggaggt 17056052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 33795924 - 33795974
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    |||||||||||||| ||||||||||||||||||||  ||||||| ||||||    
T  33795924 tgggaggttggagggtgggggccggagtggttcttcgtggtggcgggaggt 33795974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 34104048 - 34104003
Alignment:
Q  192 ggaggttggaggatgggggccggagtggttctttttggtggcagga 237  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||    
T  34104048 ggaggttggaggatgggggctggagtggttcttgttggtggaagga 34104003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 18671743 - 18671683
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||||||||| |||||  ||||||| |||||| |||||||||    
T  18671743 tgggaggttggaggtggggggccggagtgtttcttcatggtggcgggaggtaggtaggatt 18671683  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 19544972 - 19545016
Alignment:
Q  193 gaggttggaggatgggggccggagtggttctttttggtggcagga 237  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||    
T  19544972 gaggttggaggttgggggccggagtggttctttgtggtggaagga 19545016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 22819174 - 22819334
Alignment:
Q  80 aggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatg 179  Q
    |||||||||||||||||||   |  ||||||| |||||||||||||| ||| | || |||   ||  |  ||||||||||||||||||| ||  | ||||    
T  22819174 aggttgagggagtttaatgtttctctgttaggcaagtggtgttggaggttattagtcgataagggtagtatgtggtatagggtgttggtagcgcgttatg 22819273  T
Q  180 gtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    |||    |||  ||||||||| || |||||||||||||| |||||| |||||| |||||||    
T  22819274 gtgaggaggacaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggt 22819334  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 13553752 - 13553819
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||||| ||||||||||||| |||||  |||||||  |||||| || |||||||| |||||    
T  13553752 gggaggttggaggttgggggccggagttgttctcattggtggagggaggtggggaggattagagatgg 13553819  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 34457725 - 34457784
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggat 249  Q
    ||||||||||||||  ||||||||||||| |||||| ||||||| |||||| || |||||    
T  34457725 tgggaggttggaggtggggggccggagtgtttctttgtggtggcgggaggtaggcaggat 34457784  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 12308690 - 12308734
Alignment:
Q  198 tggaggatgggggccggagtggttctttttggtggcaggaggttg 242  Q
    |||||| |||||||||||||||||||| |||||||  ||||||||    
T  12308690 tggaggttgggggccggagtggttcttattggtggagggaggttg 12308734  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 29557890 - 29557846
Alignment:
Q  83 ttgagggagtttaatgaggcgttgttaggaaagtggtgttggaga 127  Q
    |||||||| ||||| ||||||||||| ||||||||||| ||||||    
T  29557890 ttgagggaatttaacgaggcgttgttgggaaagtggtgatggaga 29557846  T

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Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 19162573 - 19162809
Alignment:
Q  19 atcttgggtgggttggcagagagtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtgg 118  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |  ||||||||||||||||||||||||||||||| ||||||    
T  19162573 atcttaggtgggttggcagagagtttgtatgagaaaggagtatggtggtttaggagttaggcggttgagggagtttaatgaggcgttgttagggaagtgg 19162672  T
Q  119 tgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtg 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  19162673 tgatggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctagatatggtgttagggacgggaggttggaggatgggggccggagtg 19162772  T
Q  219 gttctttttggtggcaggaggttggtaggattaggga 255  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  19162773 gttctttttggtggaaggaggttggtaggattgggga 19162809  T

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Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 40688810 - 40688577
Alignment:
Q  19 atcttgggtgggttggcagagagtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtgg 118  Q
    |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |   |||||||||||||||||||||||||||||| ||||||    
T  40688810 atcttgggtgggttggcagagaatttgtatgagaaaggagtatggtggtttaggagttaggcagttgagggagtttaatgaggcgttgttagggaagtgg 40688711  T
Q  119 tgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtg 218  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  40688710 tgttggaggttacttgttgatcgaggagggttgtggtatcgggtgttggttggtagatatggtgttagggatgggaggttggaggatgggggccggagtg 40688611  T
Q  219 gttctttttggtggcaggaggttggtaggattag 252  Q
    |||||||||||||| |||||||||||||||||||    
T  40688610 gttctttttggtggaaggaggttggtaggattag 40688577  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 41 - 258
Target Start/End: Complemental strand, 7099204 - 7098987
Alignment:
Q  41 gtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatc 140  Q
    |||||||||  ||||||| |||||||||| || ||| |   ||||||||||||||||||||||||||| ||||||| ||||||||| ||  | |||||||    
T  7099204 gtttgtatgctaaaggagtatggaggtttgggtgttaggcagttgagggagtttaatgaggcgttgttgggaaagttgtgttggagtttgttagttgatc 7099105  T
Q  141 gtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    | |  || ||||||||| |||| ||| | ||| |||||||||    ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  7099104 gagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggt 7099005  T
Q  241 tggtaggattagggatgg 258  Q
    ||  | ||||||||||||    
T  7099004 tgtgaagattagggatgg 7098987  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 83 - 258
Target Start/End: Complemental strand, 54685290 - 54685115
Alignment:
Q  83 ttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtg 182  Q
    ||||| ||||| |||||||| ||||| || || ||||||||||||||| | |||||| |  ||||||| ||||||  ||||||||||||| | |||||||    
T  54685290 ttgagagagttcaatgaggcattgttggggaaatggtgttggagattattagttgatagaagagggttatggtatcaggtgttggttgctaggtatggtg 54685191  T
Q  183 ttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |  | ||||||||||||||||||||||||| |||||||||| ||||||||   |||| | ||||||||||||||||    
T  54685190 tgcgtgatgggaggttggaggatgggggccagagtggttctatttggtggacagaggatcgtaggattagggatgg 54685115  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 8935647 - 8935579
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| || ||||||||||||||    
T  8935647 tgggaggttggaggatgggggccggagttgttcttcttggtggcgggaggtggggaggattagggatgg 8935579  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 29553307 - 29553375
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |   ||||||||||||    
T  29553307 tgggaggttggaggatgggggccggagtggttctttgtggtggcgggaggttaggcagattagggatgg 29553375  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 19115009 - 19114941
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| |||||||| |||| |||||| |||||||| |||||| || ||||||||||||||    
T  19115009 tgggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtagggaggattagggatgg 19114941  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 23657870 - 23657802
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||| ||| |||||| |||||||| ||||||  | ||||||||||||||    
T  23657870 tgggaggttggaggatgggggccgaagttgttcttcttggtggcgggaggtgaggaggattagggatgg 23657802  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 49925834 - 49925902
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||||| |||||||| |||||| || | ||||||||||||    
T  49925834 tgggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtggggaagattagggatgg 49925902  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 4524194 - 4524253
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||| || ||||||    
T  4524194 gggaggttggaggttgggggccggagttgttcttcttggtggcaggaggtagggaggatt 4524253  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 5789549 - 5789707
Alignment:
Q  80 aggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatg 179  Q
    |||||||||||||||||||   | ||||| ||||||||||||||||| ||  | || ||  ||| ||||||||||  || |||||| || ||| | ||||    
T  5789549 aggttgagggagtttaatgtcactttgttgggaaagtggtgttggaggttgttagtagagagtgaagggttgtggcgtaaggtgttagtggctaggtatg 5789648  T
Q  180 gtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggag 238  Q
    ||||   || |||  | ||||||||||||||||||||| |||||| |||||||| ||||    
T  5789649 gtgtggagggtggaggtttggaggatgggggccggagttgttcttcttggtggcgggag 5789707  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 38296414 - 38296345
Alignment:
Q  55 ggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttgg 124  Q
    |||| |||| ||||| ||||| || |||||||||||||||||||||||||| ||||| || |||||||||    
T  38296414 ggagtatggtggtttgggagtgcggaggttgagggagtttaatgaggcgttattagggaaatggtgttgg 38296345  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 55725235 - 55725315
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||||||||||||||| ||| | ||||||||   ||||||  | ||||||||||||||||||||| |||||| |||||||    
T  55725235 tggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccggagttgttcttcttggtgg 55725315  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 19648273 - 19648214
Alignment:
Q  199 ggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||| ||||||||||||| |||||| |||||||| |||||| || ||||||||||||||    
T  19648273 ggaggttgggggccggagttgttcttcttggtggcgggaggtggggaggattagggatgg 19648214  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 48805554 - 48805501
Alignment:
Q  187 ggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    ||||||||||||||||  |||| |||||||||||||||| |||||| |||||||    
T  48805554 ggatgggaggttggagattgggtgccggagtggttctttgtggtggaaggaggt 48805501  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 4551336 - 4551412
Alignment:
Q  143 ggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtgg 219  Q
    ||||| || ||||||||||||||||||||| | ||||||||   ||||| |||||| |||||||||| | |||||||    
T  4551336 ggaggtttttggtatagggtgttggttgctcgttatggtgtggaggatgagaggttagaggatggggactggagtgg 4551412  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 20396155 - 20396087
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||  ||||||||||||| |||||| |||||||| |||||| ||  ||||||| |||||    
T  20396155 tgggaggttggagtttgggggccggagttgttcttcttggtggcgggaggtagggcggattagagatgg 20396087  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 29328238 - 29328278
Alignment:
Q  84 tgagggagtttaatgaggcgttgttaggaaagtggtgttgg 124  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  29328238 tgagggagtttaatcatgcgttgttaggaaagtggtgttgg 29328278  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 9691039 - 9690953
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||| |||||||||||| | || ||| |||||||||    || |||||||||||||| |||||||||||||| ||||  |||||||    
T  9691039 gggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccggagtgtttctcattggtgg 9690953  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 26694503 - 26694441
Alignment:
Q  188 gatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||||  |||||| |||||| |||||| ||||||| |||||| || ||||||    
T  26694503 gatgggaggttggaggtggggggctggagtgtttctttgtggtggcgggaggtaggcaggatt 26694441  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 48312711 - 48312633
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctt 224  Q
    |||||||||  |||||||||||| ||| | ||||||||   ||||||  | ||||||||||||||||||||| ||||||    
T  48312711 gggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccggagttgttctt 48312633  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 9777946 - 9777893
Alignment:
Q  187 ggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    |||||||||||||  || |||||||||||||| |||||| |||||| |||||||    
T  9777946 ggatgggaggttgacggttgggggccggagtgtttctttgtggtggaaggaggt 9777893  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 42778810 - 42778769
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||||||||||| ||||||||||||| |||||| |||||||    
T  42778810 gggaggttggaggttgggggccggagttgttcttcttggtgg 42778769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 10562900 - 10562968
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| |||||||| |||| |||||| |||||||  |||||| ||  ||||||| |||||    
T  10562900 tgggaggttggaggttgggggccagagttgttcttcttggtggagggaggtagggcggattagagatgg 10562968  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 46146294 - 46146202
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggag 238  Q
    |||||||||  |||||||||||| ||| |||||||||    ||||||  | |||||| |||||||||||||| |||| | |||||||| ||||    
T  46146294 gggttgtggcgtagggtgttggtggctagatatggtgcagcggatggtggtttggagaatgggggccggagttgttcatcttggtggcgggag 46146202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 36256520 - 36256289
Alignment:
Q  19 atcttgggtgggttggcagagagtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtgg 118  Q
    |||||||||||||||||||||  ||||| ||||||| ||| |||| |||||||||||| |   |||||| ||||||||||||||||||||||| |||||     
T  36256520 atcttgggtgggttggcagag--tttgtctgagaaatgagtatggtggtttaggagttaggcagttgagagagtttaatgaggcgttgttagggaagtga 36256423  T
Q  119 tgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  36256422 tgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgttagatatggtgttagggatgggaggttggaggatgggggccggagtg 36256323  T
Q  219 gttctttttggtggcaggaggttggtaggattag 252  Q
    |||||||||||||| | |||||||||||||||||    
T  36256322 gttctttttggtggaaagaggttggtaggattag 36256289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 18896211 - 18896145
Alignment:
Q  101 gcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttgg 167  Q
    ||||||||||| |||||||||||||||||  | |||||| | |||||||||||||||||| ||||||    
T  18896211 gcgttgttaggtaagtggtgttggagattgttggttgatagaggagggttgtggtataggatgttgg 18896145  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 22094817 - 22094885
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||| ||| ||||||  ||||||| |||||| || || |||||||||||    
T  22094817 tgggaggttggaggatgggggccgaagttgttcttcgtggtggcgggaggtggggagaattagggatgg 22094885  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 26262962 - 26263040
Alignment:
Q  154 gtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    |||||||||||| |||||| | |||||||    |||||| ||||||| || ||||||||||||||| ||||||||||||    
T  26262962 gtatagggtgttagttgctcgttatggtgaggaggatggaaggttggtgggtgggggccggagtgggtctttttggtgg 26263040  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 41590707 - 41590601
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatta 251  Q
    ||||||||||||||||| ||  | |||||||    |||||||||||||| || |||||||||||| ||||||| ||||||||| | | ||| ||  ||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggagaggttcttcttggtggcatgcgattgctaatatta 41590608  T
Q  252 gggatgg 258  Q
    |||||||    
T  41590607 gggatgg 41590601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 27325338 - 27325285
Alignment:
Q  189 atgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttg 242  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||  ||||||||    
T  27325338 atgggaggttggaggatggggaccggaggggttctttgtggtggagggaggttg 27325285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 38358040 - 38357980
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||| |||||| |||||||||    
T  38358040 tgggaggttggaggtggggggccggagtgtttccttgtggtggcgggaggtaggtaggatt 38357980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 380473 - 380434
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggt 230  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  380473 gggaggttggaggttgggggccggagtggttcttcttggt 380434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 258
Target Start/End: Complemental strand, 33170338 - 33170163
Alignment:
Q  83 ttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtg 182  Q
    |||||||||||||||   || ||||||||||| ||||||||||| ||  | || ||  | |  |||||||||  ||||||||| || ||| | |||||||    
T  33170338 ttgagggagtttaatattgctttgttaggaaaatggtgttggaggttgttagtagagagagatgggttgtggcgtagggtgttagtggctaggtatggtg 33170239  T
Q  183 ttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
        ||||||  | ||||||||||||||||||||| |||| | |||||||| |||| | |  ||||||||||||||    
T  33170238 cggcggatggtggtttggaggatgggggccggagttgttcatcttggtggcgggagatagtgaggattagggatgg 33170163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 4297838 - 4297944
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatta 251  Q
    ||||||||||||||||| ||  | |||||||    |||||||||||||| || ||||| |||||| ||||||| ||||||||| | | ||| ||  ||||    
T  4297838 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggagaggttcttcttggtggcacgcgattgctaatatta 4297937  T
Q  252 gggatgg 258  Q
    |||||||    
T  4297938 gggatgg 4297944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 20208286 - 20208328
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    |||||||||||||| ||||||||||||| |||| |||||||||    
T  20208286 tgggaggttggaggttgggggccggagttgttcgttttggtgg 20208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 31642114 - 31642036
Alignment:
Q  160 ggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggag 238  Q
    ||||||||| ||| ||||||||||   ||||||  | ||||||||||||||||||||| ||||||  ||||||| ||||    
T  31642114 ggtgttggtggctagatatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggcgggag 31642036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 42039228 - 42039314
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||| ||||||||||||||||| ||   ||||||||    || |||| |||||||||||||||||||||||| || || |||||||    
T  42039228 gggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtgg 42039314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 19513032 - 19513105
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatggagagg 263  Q
    ||||||||||||||  |||||||||||| |||||| |||||||  |||||| || |||||| | ||||| ||||    
T  19513032 tgggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggattcgagatggggagg 19513105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 31864810 - 31864749
Alignment:
Q  194 aggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattaggga 255  Q
    |||| ||||| ||| || ||||||||||||| |||||||| |||||| || |||||||||||    
T  31864810 aggtgggaggttggcggtcggagtggttcttcttggtggcgggaggtggggaggattaggga 31864749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 34338456 - 34338415
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||||||||||| |||||||||||||| ||||| |||||||    
T  34338456 gggaggttggaggttgggggccggagtgtttcttcttggtgg 34338415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 6866937 - 6866877
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||| |||||||||||  ||||||| |||||| | |||||||    
T  6866937 tgggaggttggaggtggggggccagagtggttcttcgtggtggcgggaggtagataggatt 6866877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 15862200 - 15862312
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggta 245  Q
    ||||| ||||||||||||||| ||||| | |||||||    || |||| ||||||||| ||||||  ||||| |||| | |||||||  |||||| | ||    
T  15862200 gggttttggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttgggggatggagttgttcgtattggtggagggaggtggcta 15862299  T
Q  246 ggattagggatgg 258  Q
    ||||||| |||||    
T  15862300 ggattagagatgg 15862312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 25856999 - 25857059
Alignment:
Q  198 tggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||| ||||||| ||||||  |||| |||  |||||||| |||||    
T  25856999 tggaggatgggggccggagttgttctttgtggtggagggagattgtgaggattagagatgg 25857059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 2207219 - 2207451
Alignment:
Q  20 tcttgggtgggttggcagagagtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggt 119  Q
    |||||||||||||||||  ||||||||| |||||||||| |||| || ||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  2207219 tcttgggtgggttggcaacgagtttgtaagagaaaggagtatggtgggttaggagttagacggttgagggagtttaatgaggcgttgttagggaagtggt 2207318  T
Q  120 gttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtgg 219  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||| ||| | |||||||||||||||||||||||| ||||    
T  2207319 gttggagattacttgtggaccgtggagggttgtggtatagggtgttggtcgctcgatatggtgtgaggaacgggaggttggaggatgggggccggggtgg 2207418  T
Q  220 ttctttttggtggcaggaggttggtaggattag 252  Q
    ||||||||||||| |||||||||| ||||||||    
T  2207419 ttctttttggtggaaggaggttgggaggattag 2207451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 13416415 - 13416182
Alignment:
Q  19 atcttgggtgggttggcagagagtttgtatgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtgg 118  Q
    |||||||||| | |||||||| || ||| | |||||| || |||| || ||||||||| |  ||||||||||||||||||||||||||||||| ||||||    
T  13416415 atcttgggtgagctggcagagtgtgtgtgtaagaaagaagtatggtggattaggagttaggcggttgagggagtttaatgaggcgttgttagggaagtgg 13416316  T
Q  119 tgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtg 218  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||  | |||||||||||||||||||||||||||||||    
T  13416315 tgttggaggttacttgttgatcgttgagggttgtggtatcgggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggggccggagtg 13416216  T
Q  219 gttctttttggtggcaggaggttggtaggattag 252  Q
    ||||| |||||||| |||||||| ||||||||||    
T  13416215 gttctatttggtggaaggaggttagtaggattag 13416182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 6727319 - 6727406
Alignment:
Q  164 ttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatta 251  Q
    ||||||||| | ||||||||  | |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  6727319 ttggttgctaggtatggtgtacgtgatgggaggttggaggatgggggccggagtggttctatttggtggaaggagattggtaggatta 6727406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 43310942 - 43310789
Alignment:
Q  80 aggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatg 179  Q
    |||||||||||||||||||  ||||||||||| || ||||||||| | ||| | || ||  |  |  | |||||||||||||||||||| ||  ||||||    
T  43310942 aggttgagggagtttaatgttgcgttgttaggcaaatggtgttggcgtttattggtggagaggagtagtttgtggtatagggtgttggtggcgagatatg 43310843  T
Q  180 gtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggc 233  Q
    | |    ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  43310842 gcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtggc 43310789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 10689246 - 10689087
Alignment:
Q  71 ggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttg 170  Q
    |||| ||| |||||||||||||||||||  |||||||||||||||||||||||| | ||| | || ||  |  |  | || ||||||||||||||||| |    
T  10689246 ggaggtcggaggttgagggagtttaatgttgcgttgttaggaaagtggtgttggcgtttattggtggagaggagtagtttatggtatagggtgttggtgg 10689147  T
Q  171 ctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtg 231  Q
       ||||||||| |  || | |||||||||||| | |||||||||||||||||| ||||||    
T  10689146 tgagatatggtgatgaggctaggaggttggagg-ttggggccggagtggttcttcttggtg 10689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 15018250 - 15018182
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||| ||| |||||| |||||||| |||||| || ||||||||||||||    
T  15018250 tgggaggttggaggttgggggccgaagttgttcttcttggtggcgggaggtagggaggattagggatgg 15018182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 26146829 - 26146745
Alignment:
Q  149 ttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggc 233  Q
    |||||||||||||||||||| ||  ||||||| |    ||||||||||||||||| ||||||||||||||||| || ||||||||    
T  26146829 ttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttattcttggtggc 26146745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 11028580 - 11028494
Alignment:
Q  53 aaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgat 139  Q
    ||||||| |||||||||||| ||  ||  ||||| |||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  11028580 aaggagcttggaggtttaggggtgagacagttgaaggagtttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgat 11028494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 28400117 - 28400177
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||||||||| |||||| ||||||| |||||| |||||||||    
T  28400117 tgggaggttggaggtggggggccggagtgtttctttgtggtggcgggaggtaggtaggatt 28400177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 9668574 - 9668641
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||||| ||||||||||||| |||||| |||||||  |||||| || |||||||| |||||    
T  9668574 gggaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatgg 9668641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 44028648 - 44028723
Alignment:
Q  51 gaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggag 126  Q
    |||||||| |||||||||| || ||| ||  ||||| ||||||||||||||||||| |||| |||||||| |||||    
T  44028648 gaaaggagtatggaggtttgggtgttagacagttgaaggagtttaatgaggcgttgctaggtaagtggtgctggag 44028723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 6725088 - 6725130
Alignment:
Q  128 ttacttgttgatcgtggagggttgtggtatagggtgttggttg 170  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  6725088 ttacttgttgatcgaggagggttgtggtatcgggtgttggttg 6725130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 35488410 - 35488350
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  |||||||| ||||||||||  ||||||| |||||| |||||||||    
T  35488410 tgggaggttggaggtggggggccgaagtggttcttcgtggtggcgggaggtaggtaggatt 35488350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 22725007 - 22725058
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtggcaggaggttg 242  Q
    ||||||||||||||||||||||||||| ||||||  ||||||| | ||||||    
T  22725007 gggaggttggaggatgggggccggagttgttcttcgtggtggcggaaggttg 22725058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 33036208 - 33036166
Alignment:
Q  82 gttgagggagtttaatgaggcgttgttaggaaagtggtgttgg 124  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    
T  33036208 gttgagggagtttaatgtagcgttgttacgaaagtggtgttgg 33036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 1380654 - 1380613
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||||||||||| ||||||||||||| |||||| |||||||    
T  1380654 gggaggttggaggttgggggccggagttgttcttcttggtgg 1380613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 11234049 - 11234114
Alignment:
Q  193 gaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||| ||||||||||||| |||||| ||||||   |||||| || |||||||| |||||    
T  11234049 gaggttggaggttgggggccggagttgttcttattggtgaagggaggtagggaggattagagatgg 11234114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 11196924 - 11196856
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||| ||||||||| |||||||||||||| ||| | |||||||| ||| || | || ||||||||||||    
T  11196924 tgggcggttggaggttgggggccggagtgtttcatcttggtggcgggaagtagctaagattagggatgg 11196856  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 32191637 - 32191609
Alignment:
Q  191 gggaggttggaggatgggggccggagtgg 219  Q
    |||||||||||||||||||||||||||||    
T  32191637 gggaggttggaggatgggggccggagtgg 32191609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 37445664 - 37445632
Alignment:
Q  192 ggaggttggaggatgggggccggagtggttctt 224  Q
    |||||||||||||||||||||||||| ||||||    
T  37445664 ggaggttggaggatgggggccggagttgttctt 37445632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 83 - 252
Target Start/End: Original strand, 4310302 - 4310471
Alignment:
Q  83 ttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtg 182  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  4310302 ttgagggagtttaatgaggcgttgttagggaagtggtgttggaggttacttgttgatcgtggagggttgtggtatagggtgttggttgctagatatgatg 4310401  T
Q  183 ttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattag 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4310402 ttagggatgggaggttggaggatgggggccggagtggttctttttggtggaaggaggttggtaggattag 4310471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 12134898 - 12134841
Alignment:
Q  192 ggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggat 249  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| || |||||    
T  12134898 ggaggttggaggttgggggccggagtggttctttatggtggcaggaggtagggaggat 12134841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 38046975 - 38046897
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctt 224  Q
    |||||||||||||| |  ||||||||| | ||||||||   ||||||||||||||||||||||||||| ||| ||||||    
T  38046975 gggttgtggtatagagcattggttgctaggtatggtgtggaggatgggaggttggaggatgggggccgaagttgttctt 38046897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 6901482 - 6901422
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||| || || ||||||    
T  6901482 tgggaggttggaggttgggggccgaagtggttcttcttggtggcaggaagtagggaggatt 6901422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 258
Target Start/End: Complemental strand, 36493089 - 36492886
Alignment:
Q  55 ggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtgg 154  Q
    |||| |||||||||| || || || |||||| ||||||||||||  ||||| ||||| || ||||||||| | ||  | |||||  |  |  | || |||    
T  36493089 ggagtatggaggtttgggggtgcggaggttgcgggagtttaatgttgcgttattaggcaaatggtgttggcgtttgttggttgagaggagtagtttatgg 36492990  T
Q  155 tatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattaggg 254  Q
    |||||||||||||| ||  | |||||||    |||||||||||||| || |||||||||||| ||||||| ||||||||| | | ||| ||  |||||||    
T  36492989 tatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggagaggttcttcttggtggcacgcgattgctaatattaggg 36492890  T
Q  255 atgg 258  Q
    ||||    
T  36492889 atgg 36492886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 17659404 - 17659339
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattaggga 255  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| ||  ||||||||||    
T  17659404 tgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 17659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 36157834 - 36157777
Alignment:
Q  82 gttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgat 139  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  36157834 gttgaaggagtttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgat 36157777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 36157727 - 36157659
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| |  |||||||| |||||    
T  36157727 tgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattagagatgg 36157659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 44082579 - 44082639
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||| ||||||| |||||| ||||||| |||||| |||||||||    
T  44082579 tgggaggttggaggtggggggtcggagtgtttctttgtggtggcgggaggtaggtaggatt 44082639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 20824865 - 20824804
Alignment:
Q  197 ttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||||||||||||| ||||||| ||||||  |||| |||  |||||||| |||||    
T  20824865 ttggaggatgggggccggagttgttctttgtggtggagggagattgtgaggattagagatgg 20824804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 43249363 - 43249427
Alignment:
Q  193 gaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||| |||| ||||||||||||| |||||||||||||| ||| ||| || |||||||| |||||    
T  43249363 gaggttagaggttgggggccggagttgttctttttggtgg-agggggtggggaggattagagatgg 43249427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8130696 - 8130463
Alignment:
Q  19 atcttgggtgggttggcagagagtttgtatgagaaaggagcatggagg-tttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtg 117  Q
    |||||||||| | |||||||| |||||| |||||||||||  ||| || |||||||||| |  | |||||||||||||||||||||||| |||| |||||    
T  8130696 atcttgggtgagctggcagagtgtttgtttgagaaaggagtctggggggtttaggagttaggcgattgagggagtttaatgaggcgttgctagggaagtg 8130597  T
Q  118 gtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagt 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  | |||||||||||||||| |||||||||||||    
T  8130596 gtgttggaggttacttgttgatcgtggagggttgtggtatagggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggttgggggccggagt 8130497  T
Q  218 ggttctttttggtggcaggaggttggtaggatta 251  Q
    ||||||||||||||| |||||||| |||||||||    
T  8130496 ggttctttttggtggaaggaggttagtaggatta 8130463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 52250653 - 52250734
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggc 233  Q
    ||||||||||||||||| ||  |||||||||    ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  52250653 tggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtggc 52250734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 36709483 - 36709423
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||||||||| |||||| ||||||| |||||| |||||||||    
T  36709483 tgggaggttggaggtggggggccggagtgtttctttgtggtggcgggaggtaggtaggatt 36709423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 45684749 - 45684689
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  ||||||||||||| |||||| ||||||| |||||| |||||||||    
T  45684749 tgggaggttggaggtggggggccggagtgtttctttgtggtggcgggaggtaggtaggatt 45684689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 16179662 - 16179452
Alignment:
Q  48 tgagaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagg 147  Q
    |||| |||||| ||| ||| || |||||| | |||||||||||||||||||  || ||||| || || ||||||||||| ||  | || ||  ||| |||    
T  16179662 tgaggaaggagtatgaagggttgggagttaggaggttgagggagtttaatgtcgctttgttggggaaatggtgttggaggttgttagtagagagtgaagg 16179563  T
Q  148 gttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtagg 247  Q
    |||||||  || |||||| || ||  | ||||||||    | |||  | ||||||||||||||||||||| |||||| |||||||| |||| |||  |||    
T  16179562 gttgtggcgtaaggtgttagtggcgaggtatggtgtagacggtggaggtttggaggatgggggccggagttgttcttcttggtggcgggagattgtgagg 16179463  T
Q  248 attagggatgg 258  Q
    ||||| |||||    
T  16179462 attagagatgg 16179452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 30188471 - 30188429
Alignment:
Q  82 gttgagggagtttaatgaggcgttgttaggaaagtggtgttgg 124  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  30188471 gttgagggagtttaatgtagcgttgttaggaaagtggtgttgg 30188429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 21740090 - 21740150
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| || ||||||    
T  21740090 tgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtcgggaggatt 21740150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 48930337 - 48930266
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttct 223  Q
    ||||||||||| ||||| ||  |||||||||    ||||||||||||||||| ||||||| |||||||||||    
T  48930337 tggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctggagtggttct 48930266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 6825433 - 6825351
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggca 234  Q
    ||||||||||||||||| ||  | |||||||    |||||||||||||| || |||||||||||| ||||||| | |||||||    
T  6825433 tggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccggagaggttcttctcggtggca 6825351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 7164076 - 7164030
Alignment:
Q  187 ggatgggaggttggaggatgggggccggagtggttctttttggtggc 233  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||||    
T  7164076 ggatgggaggttagaggttgggggccggagtgtttcttcttggtggc 7164030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 5342782 - 5342831
Alignment:
Q  193 gaggttggaggatgggggccggagtggttctttttggtggcaggaggttg 242  Q
    ||||||||||||| ||||||||||||||||||  ||||||  ||||||||    
T  5342782 gaggttggaggataggggccggagtggttcttcgtggtggagggaggttg 5342831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 23819245 - 23819188
Alignment:
Q  82 gttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgat 139  Q
    ||||| ||| |||||| |||| |||||||||||||||||||||||  | |||||||||    
T  23819245 gttgaaggaatttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgat 23819188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 42675004 - 42675064
Alignment:
Q  188 gatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggat 249  Q
    |||||||||||||||| |||||||||||||  |||||| ||||||| |||||| || |||||    
T  42675004 gatgggaggttggagg-tgggggccggagtatttctttgtggtggcgggaggtaggcaggat 42675064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7164173 - 7164129
Alignment:
Q  80 aggttgagggagtttaatgaggcgttgttaggaaagtggtgttgg 124  Q
    |||||||||||||||||||| |||||||| | ||| |||||||||    
T  7164173 aggttgagggagtttaatgatgcgttgttggaaaaatggtgttgg 7164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 14864032 - 14864092
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  |||||||||||| |||||| |||||||  |||||| || ||||||    
T  14864032 tgggaggttggaggtggggggccggagttgttcttcttggtggagggaggtagggaggatt 14864092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 24926255 - 24926315
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    |||||||||||||| |||  ||||||||||||||  |||||||| |||||| || ||||||    
T  24926255 tgggaggttggaggttggtcgccggagtggttctacttggtggccggaggtagggaggatt 24926315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 43121238 - 43121302
Alignment:
Q  194 aggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||| ||||| ||||||||||||| |||||| |||||||  |||||| |  ||||||||||||||    
T  43121238 aggtaggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattagggatgg 43121302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 52250582 - 52250626
Alignment:
Q  80 aggttgagggagtttaatgaggcgttgttaggaaagtggtgttgg 124  Q
    |||||||||||||||||||  ||||||||||| || |||||||||    
T  52250582 aggttgagggagtttaatgttgcgttgttagggaaatggtgttgg 52250626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 15602998 - 15602829
Alignment:
Q  89 gagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgttaggg 188  Q
    ||||| |||||||| ||||| || || |||||| |||||||| | |||||| |  ||||||| ||||||  ||||||||||||| | ||||||||  | |    
T  15602998 gagttcaatgaggcattgttggggaaatggtgtcggagattattagttgatagaagagggttatggtatcaggtgttggttgctaggtatggtgtgcgtg 15602899  T
Q  189 atgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  15602898 atgggaggttggaggatgggggccggagtggttctatttggtggatggaggttcgtaggattagggatgg 15602829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 503099 - 503167
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| || ||||||||||||||    
T  503099 tgggaggttggaggatgggggccggagttgttcttcttggtggcgggaggtggggaggattagggatgg 503167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 8264796 - 8264728
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| || ||||||||||||||    
T  8264796 tgggaggttggaggatgggggccggagttgttcttcttggtggcgggaggtggggaggattagggatgg 8264728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 19257465 - 19257407
Alignment:
Q  197 ttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattaggga 255  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  19257465 ttggaggttgggggccggagtgattcttgttggtggcaggaggttggtaggattaggga 19257407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 13086111 - 13086044
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||| || |||||||| |||||    
T  13086111 gggaggttggaggttgggggccggagttgttctttttggtggaaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 5085593 - 5085661
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||||||||||||| ||| |||||| |||||||| |||||| || ||||||||| ||||    
T  5085593 tgggaggttggaggatgggggccgaagttgttcttcttggtggcgggaggtggggaggattaggaatgg 5085661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 19256213 - 19256145
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| |||||||| |||| |||||| |||||||| |||||| || ||||||||||||||    
T  19256213 tgggaggttggaggttgggggccagagttgttcttcttggtggcgggaggtggggaggattagggatgg 19256145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 23065613 - 23065673
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  |||||||||||||||||||  |||||||||||||| |||||||||    
T  23065613 tgggaggttggaggtggggggccggagtggttcttcgtggtggcaggaggtaggtaggatt 23065673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 10362744 - 10362658
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggag 238  Q
    ||||||||||| ||||| ||  |||||||||    |||||||||||||||||  ||||||||||||||||||| |||||||| ||||    
T  10362744 tggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtggcgggag 10362658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 32186300 - 32186188
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggta 245  Q
    ||||| ||||||||||||||||| ||  ||||| |||    || |||||||||||||| |||||||||||||| ||||| |||||||  |||||| |  |    
T  32186300 gggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttggtggagggaggtagtga 32186201  T
Q  246 ggattagggatgg 258  Q
     ||||||||||||    
T  32186200 agattagggatgg 32186188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 33640490 - 33640423
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||| |||||| || ||||||||||||||    
T  33640490 tgggaggttggaggttgggg-ccggagttgttcttcttggtggcgggaggtggggaggattagggatgg 33640423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 19350561 - 19350447
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggta 245  Q
    ||||| ||||||||||||||||| ||  |||||||||    ||  ||||||||||||| ||||||||||||||  || | ||||||| ||||||| |  |    
T  19350561 gggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccggagtgtatcatcttggtggaaggaggtagcga 19350462  T
Q  246 ggattagggatggag 260  Q
     ||||||||||||||    
T  19350461 agattagggatggag 19350447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 29056132 - 29056042
Alignment:
Q  150 tgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    ||||||||||||||||||| ||  | |||||||    |||||||||||||| || |||||||||||||| |||||  |||||| |||||||    
T  29056132 tgtggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaaggaggt 29056042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 11060429 - 11060494
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattaggga 255  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| ||  ||||||||||    
T  11060429 tgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattaggga 11060494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 17078757 - 17078825
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| ||  ||||||| |||||    
T  17078757 tgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatgg 17078825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 18051016 - 18051084
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| ||  ||||||| |||||    
T  18051016 tgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtagggcggattagagatgg 18051084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 18588966 - 18588870
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttg 242  Q
    ||||| |||||| | |||||||| ||| |||||||||    ||| |||||||||||||||||||| ||   ||||||||| |||||| |||||||||    
T  18588966 gggttatggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggaggatgggggtcgtgttggttctttatggtgggaggaggttg 18588870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 33805353 - 33805293
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||  |||||||||||| |||||| |||||||| |||||| || ||||||    
T  33805353 tgggaggttggaggtggggggccggagttgttcttcttggtggcgggaggtagggaggatt 33805293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 7956099 - 7956289
Alignment:
Q  51 gaaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggtt 150  Q
    |||||||| ||||||||||||||||| ||  ||||||   ||||||||||||  |||| || ||||| |||||| |  |  | |||||| | |  ||  |    
T  7956099 gaaaggagtatggaggtttaggagttagacagttgagtatgtttaatgaggctctgttgggtaagtgatgttggcgtatgttagttgatagagatggtct 7956198  T
Q  151 gtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttg 242  Q
     |||||| | |||||||| ||| |||||||||    ||| |||||||||||||||| || ||||||||||||||| |||||| || ||||||    
T  7956199 ttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggaggatgagg-ccggagtggttctttatggtggaagaaggttg 7956289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 26514341 - 26514255
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    ||||| |||||||| |||||||| ||| | |||||||    ||  ||||| ||||||| ||||||||||||||||||| ||||||||    
T  26514341 gggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggagtggttctatttggtgg 26514255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 13938285 - 13938244
Alignment:
Q  197 ttggaggatgggggccggagtggttctttttggtggcaggag 238  Q
    ||||||||||||||||||||| |||| | |||||||||||||    
T  13938285 ttggaggatgggggccggagttgttcatcttggtggcaggag 13938244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 18682148 - 18682189
Alignment:
Q  197 ttggaggatgggggccggagtggttctttttggtggcaggag 238  Q
    ||||||||||||||||||||| |||||| |||||||| ||||    
T  18682148 ttggaggatgggggccggagttgttcttcttggtggcgggag 18682189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 11469141 - 11469082
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggatt 250  Q
    ||||||||||||||| ||||| |||||| |||||| |||||||  ||||||||| ||||||    
T  11469141 tgggaggttggaggaaggggg-cggagttgttcttcttggtggagggaggttgggaggatt 11469082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 25350839 - 25350755
Alignment:
Q  146 gggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggt 230  Q
    ||||| ||||||||||||||||| ||  | |||||||    || ||||||||||| ||  ||||||||||||| |||||||||||    
T  25350839 gggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattctttttggt 25350755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 86667 - 86836
Alignment:
Q  89 gagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggt-tgtggtatagggtgttggttgctggatatggtgttagg 187  Q
    |||||||| ||||| |||||||||||||| || |||||||| ||||||||  | | || || |||||||| | |||||||||||| |||||||||    |    
T  86667 gagtttaacgaggcattgttaggaaagtgatgatggagattgcttgttgagagag-agagtatgtggtatcgagtgttggttgctagatatggtgaggag 86765  T
Q  188 gatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
      ||||||||||||||||||||| | |||||||| |  ||||||| |||||||||  |  |||||||||||    
T  86766 tgtgggaggttggaggatgggggtcagagtggttgtaattggtggaaggaggttgtgaaaattagggatgg 86836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 25504561 - 25504629
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| |||||||| |||| |||||| |||||||| ||||||||| | ||||||||||||    
T  25504561 tgggaggttggaggttgggggccagagttgttcttcttggtggcgggaggttgggaagattagggatgg 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 27393408 - 27393508
Alignment:
Q  82 gttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggt 181  Q
    |||| |||||||||||   || ||||||||||||||||||||||| ||  | |||||| | ||||| || ||||||| ||||||||||||| | ||||||    
T  27393408 gttgcgggagtttaatcttgcattgttaggaaagtggtgttggaggttgttggttgatagaggaggtttatggtatatggtgttggttgctaggtatggt 27393507  T
Q  182 g 182  Q
    |    
T  27393508 g 27393508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 39430850 - 39430782
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||||| |||||||  |||||| || |||||||| |||||    
T  39430850 tgggaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatgg 39430782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 49264532 - 49264599
Alignment:
Q  191 gggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||||| ||||||||||||| |||||| |||||||  |||||| || |||||||| |||||    
T  49264532 gggaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatgg 49264599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 22191309 - 22191399
Alignment:
Q  150 tgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    ||||||||||||||||||| ||  | |||||||    |||||||||||||| || |||||||||||||| |||||  |||||| |||||||    
T  22191309 tgtggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggttgggggccggagtgtttcttcgtggtggaaggaggt 22191399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 20796238 - 20796173
Alignment:
Q  193 gaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    ||||||||||| ||||||||||||| |||||| |||||||  |||||| || |||||||| |||||    
T  20796238 gaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatgg 20796173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 28097425 - 28097482
Alignment:
Q  82 gttgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgat 139  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||  | |||||||||    
T  28097425 gttgaaggagtttaatcaggctttgttaggaaagtggtgttggagtatgcttgttgat 28097482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 21405516 - 21405360
Alignment:
Q  84 tgagggagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctggatatggtgt 183  Q
    |||||||||||||||   |  |||||||||| ||||||||||| ||| | ||||||   ||  |  ||||||||||||||||||| ||  | |||||||     
T  21405516 tgagggagtttaatgtttctctgttaggaaaatggtgttggaggttattagttgataagggtagtatgtggtatagggtgttggtagcacgttatggtga 21405417  T
Q  184 tagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
       |||||||||||||| || |||||||| ||||| |||||  |||||| |||||||    
T  21405416 ggaggatgggaggttggtggttgggggccagagtgtttcttcgtggtggaaggaggt 21405360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 3074358 - 3074268
Alignment:
Q  150 tgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggt 240  Q
    ||||||||||||||||||| ||  | |||||||    |||||||||||||| || ||||| |||||||| |||||  |||||| |||||||    
T  3074358 tgtggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaaggaggt 3074268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 5809168 - 5809086
Alignment:
Q  176 tatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||| | || |||||||||||||| |||||||||||||| ||| | || ||||||||| || |  | ||||||||||||    
T  5809168 tatggtgtgaaggttgggaggttggaggttgggggccggagtgtttcatcttagtggcaggaagtagtgaagattagggatgg 5809086  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 20717606 - 20717561
Alignment:
Q  93 ttaatgaggcgttgttaggaaagtggtgttggagattacttgttgat 139  Q
    |||||| ||||||||| |||||||||||||||||||||| |||||||    
T  20717606 ttaatgcggcgttgtt-ggaaagtggtgttggagattacatgttgat 20717561  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 39430988 - 39430914
Alignment:
Q  52 aaaggagcatggaggtttaggagttcgaaggttgagggagtttaatgaggcgttgttaggaaagtggtgttggag 126  Q
    |||||||  |||||| ||||| ||| | ||||||||||||||||||   || |||||||| ||||||||||||||    
T  39430988 aaaggagtctggagggttaggggttaggaggttgagggagtttaattgtgctttgttaggtaagtggtgttggag 39430914  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 45270817 - 45270783
Alignment:
Q  187 ggatgggaggttggaggatgggggccggagtggtt 221  Q
    ||||||||||||||||| |||||||||||||||||    
T  45270817 ggatgggaggttggaggttgggggccggagtggtt 45270783  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 33260156 - 33260196
Alignment:
Q  86 agggagtttaatgaggcgttgttaggaaagtggtgttggag 126  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  33260156 agggagtttaatttggcgttgttagggaagtggtgttggag 33260196  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 33280315 - 33280355
Alignment:
Q  86 agggagtttaatgaggcgttgttaggaaagtggtgttggag 126  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  33280315 agggagtttaatttggcgttgttagggaagtggtgttggag 33280355  T

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Target: scaffold0912 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 2440 - 2508
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||||| |||||||| |||||| ||  ||||||| |||||    
T  2440 tgggaggttggaggttgggggccggagttgttcttcttggtggcgggaggtagggcggattagagatgg 2508  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 67700 - 67611
Alignment:
Q  143 ggagggttgtggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtgg 232  Q
    |||||||| ||||||||||||||| || || | |||||||    ||  ||||||||||||| ||||||| |||||||||||| |||||||    
T  67700 ggagggttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggggctggagtggttcttcttggtgg 67611  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 182688 - 182620
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||  ||||||||||||| |||||| |||||||| |||||| ||  ||||||| |||||    
T  182688 tgggaggttggagtttgggggccggagttgttcttcttggtggcgggaggtagggcggattagagatgg 182620  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 55273 - 55191
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggca 234  Q
    ||||||||||||||||| ||  ||||||| |    ||||| ||||||||||| |||||||||||||| || || |||||||||    
T  55273 tggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagtgatttttcttggtggca 55191  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 143361 - 143443
Alignment:
Q  152 tggtatagggtgttggttgctggatatggtgttagggatgggaggttggaggatgggggccggagtggttctttttggtggca 234  Q
    ||||||||||||||||| ||  ||||||| |    ||||| ||||||||||| |||||||||||||| || || |||||||||    
T  143361 tggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagtgatttttcttggtggca 143443  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 1265 - 1314
Alignment:
Q  89 gagtttaatgaggcgttgttaggaaagtggtgttggagattacttgttga 138  Q
    |||||||| ||||| |||||||||||||| || |||||||| ||||||||    
T  1265 gagtttaacgaggcattgttaggaaagtgatgatggagattgcttgttga 1314  T

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Target: scaffold0179 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 8105 - 8037
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||| | |||||||  |||||| ||  ||||||| |||||    
T  8105 tgggaggttggaggttgggggccggagttgttcgtcttggtggagggaggtggggcggattagagatgg 8037  T

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Target: scaffold0179; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 13039 - 12971
Alignment:
Q  190 tgggaggttggaggatgggggccggagtggttctttttggtggcaggaggttggtaggattagggatgg 258  Q
    |||||||||||||| ||||||||||||| |||| | |||||||  |||||| ||  ||||||| |||||    
T  13039 tgggaggttggaggttgggggccggagttgttcgtcttggtggagggaggtggggcggattagagatgg 12971  T

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