View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19634_low_1 (Length: 497)
Name: NF19634_low_1
Description: NF19634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19634_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4954014 - 4953764
Alignment:
| Q |
1 |
ctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtcttttatattagatt |
100 |
Q |
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| T |
4954014 |
ctccaatgaattgcgaaaacctgtcaccccagatcatctcaaactccccaaaccattcaaatatcctgaaaggtatctaccttgtcttttatattagatt |
4953915 |
T |
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| Q |
101 |
ctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgcgtgcttgtttgaat |
200 |
Q |
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| T |
4953914 |
atctgtaatcacgcaattccataaagatctgacagctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgtgtgcttgtttgaat |
4953815 |
T |
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| Q |
201 |
tgattttgacatgttttatgttatatggtagtttaattgattgttttggta |
251 |
Q |
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| T |
4953814 |
tgattttgacatgttttatgttatctggtagtttaattgattgtttcggta |
4953764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4938305 - 4938055
Alignment:
| Q |
1 |
ctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctaccttgtcttttatattagatt |
100 |
Q |
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| T |
4938305 |
ctccaatgaattgcgaaaacctgtcaccccatatcatctcaaactccccaaaccattcaaatatcttgaaaggtatctaccttgtcttttatattagatt |
4938206 |
T |
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| Q |
101 |
ctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgcgtgcttgtttgaat |
200 |
Q |
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| T |
4938205 |
ctctgtaatgacgcaattccataaagatccgacggctcatatttcgagttgtattttaaagttgattcagtgatggttaagactgcgtgcttatttgaat |
4938106 |
T |
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| Q |
201 |
tgattttgacatgttttatgttatatggtagtttaattgattgttttggta |
251 |
Q |
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| T |
4938105 |
tgattttgacatgttttatgttatctggtagtttaattgattgtttcggta |
4938055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 315 - 493
Target Start/End: Complemental strand, 4937991 - 4937813
Alignment:
| Q |
315 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
414 |
Q |
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| T |
4937991 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4937892 |
T |
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| Q |
415 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
493 |
Q |
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| T |
4937891 |
ctatcattatgtgttggctaattgttattttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4937813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 315 - 493
Target Start/End: Complemental strand, 4953700 - 4953522
Alignment:
| Q |
315 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4953700 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4953601 |
T |
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| Q |
415 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
493 |
Q |
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| T |
4953600 |
ctatcattatgtgttggctaattgtttttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4953522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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