View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19634_low_3 (Length: 257)
Name: NF19634_low_3
Description: NF19634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19634_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 27452919 - 27453125
Alignment:
| Q |
10 |
ataattctcttgccttcgatgaataaacagaagttgctaagatgaaaatcattcctagcctcctctttcctggcctctttccttcagacaagcttcctgt |
109 |
Q |
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| T |
27452919 |
ataattctgttgccttcgatgaataaacagaagttgctaagatgaaaatcattcctggcctcctctttcctggcctctttccttcagacaagcctcctgt |
27453018 |
T |
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| Q |
110 |
gaccaccaacccgcttcttgcggagaagcctcctgtgacgaccaatccaattctagacttctatcttgctaagaagctcgaagaggaaagtaagtttgtg |
209 |
Q |
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| T |
27453019 |
gaccaccaacccgcttcttgcggagaagcctcctgtgacgactaatccaattctagacttctatcttgctaagaagctcgaagcggaaagtaagtttgtg |
27453118 |
T |
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| Q |
210 |
tcttgtc |
216 |
Q |
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||||||| |
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| T |
27453119 |
tcttgtc |
27453125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 20949848 - 20949962
Alignment:
| Q |
99 |
aagcttcctgtgaccaccaacccgcttcttgcggagaagcctcctgtgacgaccaatccaattctagacttctatcttgctaagaagctcgaagaggaaa |
198 |
Q |
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| T |
20949848 |
aagcctcctgtgacggccaactcgcttctttctgagaagcctccagtgacgaccaacccggttctcaacttctatcatgctaagaagcaagaagtggaaa |
20949947 |
T |
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| Q |
199 |
gtaagtttgtgtctt |
213 |
Q |
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| T |
20949948 |
gtaagtttgtgtctt |
20949962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 20950819 - 20950933
Alignment:
| Q |
99 |
aagcttcctgtgaccaccaacccgcttcttgcggagaagcctcctgtgacgaccaatccaattctagacttctatcttgctaagaagctcgaagaggaaa |
198 |
Q |
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| T |
20950819 |
aagcctcctgtgacggccaactcgcttctttctgagaagcctccagtgacgaccaacccggttctcaacttctatcatgctaagaagcaagaagtggaaa |
20950918 |
T |
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| Q |
199 |
gtaagtttgtgtctt |
213 |
Q |
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| T |
20950919 |
gtaagtttgtgtctt |
20950933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 50667794 - 50667839
Alignment:
| Q |
10 |
ataattctcttgccttcgatgaataaacagaagttgctaagatgaa |
55 |
Q |
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| T |
50667794 |
ataattttcttgcctttgatgaataaacagaagttgctgagatgaa |
50667839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 25603498 - 25603531
Alignment:
| Q |
20 |
tgccttcgatgaataaacagaagttgctaagatg |
53 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
25603498 |
tgcctttgatgaataaacagaagttgctaagatg |
25603531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 25860489 - 25860522
Alignment:
| Q |
20 |
tgccttcgatgaataaacagaagttgctaagatg |
53 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
25860489 |
tgcctttgatgaataaacagaagttgctaagatg |
25860522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 25884330 - 25884363
Alignment:
| Q |
20 |
tgccttcgatgaataaacagaagttgctaagatg |
53 |
Q |
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| T |
25884330 |
tgcctttgatgaataaacagaagttgctaagatg |
25884363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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