View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_high_14 (Length: 247)
Name: NF19635_high_14
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 4489354 - 4489578
Alignment:
| Q |
13 |
ggattgtgagcgcaatatgggccgaacacaaccgttttgatgtcttgctaattgcattaaatttgaggtttcatcaaccgcattggttacgattataagt |
112 |
Q |
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| T |
4489354 |
ggattgtgagcgcaatatgggccgaacacaaccgttttgatgtcttgctaattgcattaaatttgaggtttcatcaaccgca-------cgattataagc |
4489446 |
T |
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| Q |
113 |
aatgacagtatgatgaaactacaaaccacaatcattattgcaaatgcgattttaaaccttgatatatattttacatatataacttcaagctattgacttt |
212 |
Q |
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| T |
4489447 |
aatgacagtatgatgaaactacaaaccacaatcattattgcaaaggcgattttaaaccttgatatatattttatatatataacttcaagctattgacttt |
4489546 |
T |
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| Q |
213 |
tgaaactgtgatatgcagatgagaataatcta |
244 |
Q |
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| T |
4489547 |
tgaaattgtgatatgcagatgagagtaatcta |
4489578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 4481824 - 4481616
Alignment:
| Q |
32 |
ggccgaacacaaccgttttgatgtcttgctaattgcattaaatttgaggtttcatcaaccgcatt-ggttacgattataagtaatgacagtatgatgaaa |
130 |
Q |
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| T |
4481824 |
ggccgaagataaacgttgtgatgtctttgtaattgcactta-tttgaggttgcatcaaccgcatttggttgcgattatatgcaaagacagtatgatgaaa |
4481726 |
T |
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| Q |
131 |
ctacaaaccacaatcattattgcaaat----gcgattttaaaccttgatatatattttacatatataacttcaagctattgacttttgaaactgtgatat |
226 |
Q |
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| T |
4481725 |
ctattaaccacaatcattgttgcaaattaatgtgattttaaaccttgatatatcttctacatatataacttcaagctattgaattttgtgattgtgatat |
4481626 |
T |
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| Q |
227 |
gcagatgaga |
236 |
Q |
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| T |
4481625 |
gcagatgaga |
4481616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 4503458 - 4503678
Alignment:
| Q |
25 |
caatatgggccgaacacaaccgttttgatgtcttgctaattgcattaaatttgaggtttcatcaaccgcattggtta-cgattataagtaatgacagtat |
123 |
Q |
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| T |
4503458 |
caatacgggccgaaccccaacgttgtgatgtcttggtaattgcattaagtttgaggttgcatcaaccgcattgggcggcaattatatgcaatatcagtat |
4503557 |
T |
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| Q |
124 |
gatgaaactacaaac--------cacaatcattattgcaaatgcgattttaaaccttgatatatattttacatatataacttcaagctattgacttttga |
215 |
Q |
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| T |
4503558 |
gatgaaactattaacaacaagttcacaatcattattgcaaatgtgattttaaaccttcatatatcttttacatatatatcttcaagctattgagttttgc |
4503657 |
T |
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| Q |
216 |
aactgtgatatgcagatgaga |
236 |
Q |
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| T |
4503658 |
aattgtgttatacagatgaga |
4503678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 4462141 - 4462046
Alignment:
| Q |
140 |
acaatcattattgcaaatgcgattttaaaccttgatatatattttacatatataacttcaagctattgacttttgaaactgtgatatgcagatgaga |
236 |
Q |
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| T |
4462141 |
acaatcattattgcaaatgtgattttataccttgatatata-tttatgtatataacttcaagctattgacttttttaattatgatatgcagatgaga |
4462046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 4470841 - 4470726
Alignment:
| Q |
121 |
tatgatgaaactacaaaccacaatcattattgcaaa--tgcgattttaaaccttgatatatattttacatatataacttcaagctattgacttttgaaac |
218 |
Q |
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| T |
4470841 |
tatgatgaaacaattaactacaatcataattgcaaaaatgtgattttaaaccttggtatata-tttatgtatataacttc-agctattgactttttcaat |
4470744 |
T |
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| Q |
219 |
tgtgatatgcagatgaga |
236 |
Q |
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| T |
4470743 |
tatgatatgcagatgaga |
4470726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 4575329 - 4575231
Alignment:
| Q |
136 |
aaccacaatcattattgcaaatgcgattttaaaccttgatatatat-tttacatatataacttcaagctattgacttttgaaactgtgatatgcagatga |
234 |
Q |
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| T |
4575329 |
aaccaaaattattattgcaaatgtgattttaaaccttgatatatatatttatacatatgactt---gctattgatttttgcaattatgacatgcagatga |
4575233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 4561516 - 4561427
Alignment:
| Q |
146 |
attattgcaaatgcgattttaaaccttgatatatattttacatatataacttcaagctattgacttttgaaactgtgatatgcagatgaga |
236 |
Q |
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||||||| |||| ||||||||||| ||||||||| |||| | |||| |||| |||||||||| ||||| || | ||| |||||||||||| |
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| T |
4561516 |
attattgttaatgtgattttaaaccatgatatata-tttatacatatgactttaagctattgatttttgcaattatgacatgcagatgaga |
4561427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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