View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_high_4 (Length: 422)
Name: NF19635_high_4
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 43166348 - 43166752
Alignment:
| Q |
8 |
tccaataaggtgatcattctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaagtatacagaattacca |
107 |
Q |
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| T |
43166348 |
tccaataaggtgatcatgctgggtgctaattcaagaataaagcaggaactcgagtcaaaaaaacaagaattccgctacgaagaagtatacagaattacca |
43166447 |
T |
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| Q |
108 |
gaaaatttaagacggttttggggaaaggcgcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaaaatgctgtcttcctc |
207 |
Q |
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| T |
43166448 |
gaaactttaagacggttttggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggtagctgtcaaaatgctgtcttcctc |
43166547 |
T |
|
| Q |
208 |
atcagctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaattttatcatgcctatgtgtgtgtgtatagatagttaatgaa |
307 |
Q |
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| T |
43166548 |
atcagctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaattttatcatgcctatgtgtgtgtgtatagatagttaatgaa |
43166647 |
T |
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| Q |
308 |
ttttatgttaactaaatatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtga |
407 |
Q |
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| T |
43166648 |
tttaatgttaactaaatatggtttttctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtga |
43166747 |
T |
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| Q |
408 |
tgatg |
412 |
Q |
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| T |
43166748 |
tgatg |
43166752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 43221594 - 43221193
Alignment:
| Q |
12 |
ataaggtgatcattctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaagtatacagaattaccagaaa |
111 |
Q |
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| T |
43221594 |
ataaggtgatcaagctgggtgctaattcaagaataaagcaggaactagagtcgaagaaacaagaattcacctatgaagaagtattaagaattaccagaaa |
43221495 |
T |
|
| Q |
112 |
atttaagacggttttggggaaaggcgcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaaaatgctgtcttcctcatca |
211 |
Q |
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| T |
43221494 |
ctttgagaaggttatagggaaaggagcatctggaacagtctaccatggctggattgatcataataca-------ctgtcaaaatgctatcttccttatct |
43221402 |
T |
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| Q |
212 |
gctcaaggatatctgcaatttcaagcagaggttatatgattaattcacattcaaatttta--tcatg-----ccta-tgtgtgtgtgtatagatagttaa |
303 |
Q |
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| T |
43221401 |
gctcaaggatttctgcaatttcaagcagaggttgtatcattaattcacttgccaattttagttaatgtgaatcctaatctgtgtgcgtgtgtatagttaa |
43221302 |
T |
|
| Q |
304 |
tgaattttatgttaactaaatatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttact |
403 |
Q |
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| T |
43221301 |
tgaatttaatgttaactaaatatggtttttctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttact |
43221202 |
T |
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| Q |
404 |
gtgatgatg |
412 |
Q |
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| T |
43221201 |
gtgatgatg |
43221193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 43175352 - 43175582
Alignment:
| Q |
26 |
ctgggtgctaattcaagaataaagcaggaactcgagtcnnnnnnncaagaattccgctatgaagaagtatacagaattaccagaaaatttaagacggttt |
125 |
Q |
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| T |
43175352 |
ctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtattaagcattaccagaaactttgaaaaggttg |
43175451 |
T |
|
| Q |
126 |
tggggaaaggcgcatctggaacagtctaccacggctggattgaccatgatactgaggttgctgtcaaaatgctgtcttcctcatcagctcaaggatatct |
225 |
Q |
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| T |
43175452 |
tggggaaaggagcatctggaacagtctaccatggctggattgatcataataccgaggtagctgtcaaaatgctatcttcctcatcagctcaaggatatct |
43175551 |
T |
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| Q |
226 |
gcaatttcaagcagaggttatatgattaatt |
256 |
Q |
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| T |
43175552 |
gcaatttcaagcagaggtagtatcattaatt |
43175582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 43175653 - 43175741
Alignment:
| Q |
324 |
tatggttttcctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtgatgatg |
412 |
Q |
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| T |
43175653 |
tatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaatacttgacaggtcttatagggttttgtgatgatg |
43175741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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