View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_high_5 (Length: 371)
Name: NF19635_high_5
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 36995769 - 36995453
Alignment:
| Q |
24 |
tgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcagg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36995769 |
tgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaatggttttcttgacgctgagggtaatgttgaagtagaattgtagattcagg |
36995670 |
T |
|
| Q |
124 |
tgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtcaatatactcataaatttttaaccttgttactaagtatat |
223 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36995669 |
tgttggggtaagtcgttatgtatgcattagaaatctcaatctcattctactgttgttggtcaatatactcataaattttttaccttgttactaagtatat |
36995570 |
T |
|
| Q |
224 |
tgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaag |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
36995569 |
tgaccaataacaggcattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttcccacctctccttgtaag |
36995470 |
T |
|
| Q |
320 |
gaagtatcgagctgagc |
336 |
Q |
| |
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| T |
36995469 |
gaagtattgagctgagc |
36995453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 329
Target Start/End: Complemental strand, 37005669 - 37005404
Alignment:
| Q |
62 |
tgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctca |
161 |
Q |
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| T |
37005669 |
tgcctgtgaaatagattttcttgaccctgagggtaatgttaaagtagaattgcagattcaggtgattgggtaagtcattatgtgtgcattaga------a |
37005576 |
T |
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| Q |
162 |
atctcattctactgttgttggtcaatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatg |
257 |
Q |
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| T |
37005575 |
atatcattctatttttattggtcaacatactcatagaattttaaccatattactaagtatatttatcaataataggcatcaggtgtcactgcattacatg |
37005476 |
T |
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| Q |
258 |
caactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcga |
329 |
Q |
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| T |
37005475 |
caactcattgtgtgattgtttttaatgcacagtgaaaaagttttcccgcctttccttgaaaggaagtttcga |
37005404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 43 - 336
Target Start/End: Original strand, 13684476 - 13684773
Alignment:
| Q |
43 |
atgtatttgatcttgagcgtgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtat |
142 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||| |
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| T |
13684476 |
atgtatttcatcttgagcgtgcctatgaaaaaggttttcttcacgctgagggtaatgttcaagtagaattgcagattcagatgtttgggtaagtcgttat |
13684575 |
T |
|
| Q |
143 |
gtatgcattagaaatctcaatctcattctactgttgttggtcaatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattg |
238 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||| | ||||| ||||||||||||||||| ||||| |
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| T |
13684576 |
gtatgcattagaaatctcaatctcattctactattgttggtcaatatactcatagaatttttaccgtattactgagtatattgaccaataacaagcattg |
13684675 |
T |
|
| Q |
239 |
ggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
336 |
Q |
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| T |
13684676 |
ggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcgcagagaaaatttcttcccgcctctccttgtaaagaagtatcgaactgagc |
13684773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 52 - 336
Target Start/End: Complemental strand, 22191879 - 22191591
Alignment:
| Q |
52 |
atcttgagcgtgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcatt |
151 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||| |
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| T |
22191879 |
atcttgagcatgcttgtgaaaaaggttttcttgacgctgaggataatgttaaagtagaattgcagattcaaatgtttgggtaagtcgttatgtatgcata |
22191780 |
T |
|
| Q |
152 |
agaaatctcaatctcattctactgttgttggtcaatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcact |
247 |
Q |
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| T |
22191779 |
agaaatctcaatctcattttactgttgttggtcaatatactcatagaatttttacaatattactaagtatattgaccaataacatgcattcggtgtcact |
22191680 |
T |
|
| Q |
248 |
gaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
336 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||| || |||||| ||| || || ||||| | |||||| |
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| T |
22191679 |
gaattccatgcaactcattgtatgattgttgttaatgcacagagaaaatatcttcccgcctctctttgtaaagaggtatcaaactgagc |
22191591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 26648486 - 26648384
Alignment:
| Q |
234 |
cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctg |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| | |||||||||| || |||||||||||||| |
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| T |
26648486 |
cattgggtgtcactgaattccatgcaactcattgtatgatcgttattaatgcacagagaaaatttcttccagcctctccttgtaaagaagtatcgagctg |
26648387 |
T |
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| Q |
334 |
agc |
336 |
Q |
| |
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||| |
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| T |
26648386 |
agc |
26648384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 26648617 - 26648531
Alignment:
| Q |
66 |
tgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcatta |
152 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | || ||||||||| ||||||||||||| |
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| T |
26648617 |
tgtgaagaaggttttcttgacgatgagggtaatgttaaagtagaattgcagattcagatttttgggtaagtccttatgtatgcatta |
26648531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 8598277 - 8597983
Alignment:
| Q |
24 |
tgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcagg |
123 |
Q |
| |
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|||||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||| ||| |||| ||| ||||||||||||||||| ||||| |
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| T |
8598277 |
tgtaagactcacccggggtatgtatatgattttgagcgtgcctgtgaaaatggttttcttgatgctaagggcaatcttgaagtagaattgcagtttcaga |
8598178 |
T |
|
| Q |
124 |
tgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtc---aatatactcataaatttttaaccttgttactaagta |
220 |
Q |
| |
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|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||| | |||||||||| |
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|
| T |
8598177 |
tgtttgggtaagtcgttatttatgcattagaaatctcaatctcattctactgttgttggtcaataatatactcatataatttttaccatattactaagta |
8598078 |
T |
|
| Q |
221 |
tattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctc |
311 |
Q |
| |
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||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| | |||||||||| ||||||||| || |||||| |
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| T |
8598077 |
tattgaccaataacagtcaatgggtgccattgaattccatgcaactcattgtatgattgttctaaatgcacagactaaatgtcttcccgcctctc |
8597983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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