View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_high_9 (Length: 306)
Name: NF19635_high_9
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_high_9 |
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| [»] scaffold1902 (2 HSPs) |
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| [»] scaffold1374 (2 HSPs) |
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| [»] scaffold0590 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 4956225 - 4956004
Alignment:
| Q |
10 |
ttttttgaggtccacaaaacatcttaaaaagaacatcttaagctattcatcctagtaatcaatcgcttatgtggctcacacaattttctaaattattttt |
109 |
Q |
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| T |
4956225 |
tttttttaggtccacaaaacatcttaaaaagaacatcttaagctattcatcctagtaatcaatctcttatgtggctcacacaattttctaaattattttt |
4956126 |
T |
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| Q |
110 |
aacttcagttataatacagggtgagggaccgnnnnnnnaaaagtaaactcaacaatttcctcaaacnnnnnnngtccatttgcacatttaacattttaaa |
209 |
Q |
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| T |
4956125 |
aacttcagttataacacagggtgagggaccgtttttttaaaagtaaactcaacaatttcctcaaacaaaaaaagtccatttgcacatttaacattttaaa |
4956026 |
T |
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| Q |
210 |
caatatcggtttgtcttgttta |
231 |
Q |
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|||||||||||||||||||||| |
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| T |
4956025 |
caatatcggtttgtcttgttta |
4956004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 4956009 - 4955970
Alignment:
| Q |
254 |
tgtttatgatgcattccccatttagataacatttatatat |
293 |
Q |
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| T |
4956009 |
tgtttatgatgcattccccatttagataacatttatatat |
4955970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1902 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold1902
Description:
Target: scaffold1902; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 95 - 49
Alignment:
| Q |
185 |
ccatttgcacatttaacattttaaacaatatcggtttgtcttgttta |
231 |
Q |
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| T |
95 |
ccatttgcacatttaacattttaaacaatatcggtttgtcttgttta |
49 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1902; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 54 - 15
Alignment:
| Q |
254 |
tgtttatgatgcattccccatttagataacatttatatat |
293 |
Q |
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| T |
54 |
tgtttatgatgcattccccatttagataacatttatatat |
15 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1374 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold1374
Description:
Target: scaffold1374; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 276 - 230
Alignment:
| Q |
185 |
ccatttgcacatttaacattttaaacaatatcggtttgtcttgttta |
231 |
Q |
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| T |
276 |
ccatttgcacatttaacattttaaacaatatcggtttgtcttgttta |
230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1374; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 235 - 196
Alignment:
| Q |
254 |
tgtttatgatgcattccccatttagataacatttatatat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
235 |
tgtttatgatgcattccccatttagataacatttatatat |
196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 3568 - 3614
Alignment:
| Q |
185 |
ccatttgcacatttaacattttaaacaatatcggtttgtcttgttta |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568 |
ccatttgcacatttaacattttaaacaatatcggtttgtcttgttta |
3614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 3609 - 3648
Alignment:
| Q |
254 |
tgtttatgatgcattccccatttagataacatttatatat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3609 |
tgtttatgatgcattccccatttagataacatttatatat |
3648 |
T |
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