View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_low_1 (Length: 608)
Name: NF19635_low_1
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 275 - 490
Target Start/End: Original strand, 44476167 - 44476374
Alignment:
| Q |
275 |
ttaattgctgtttgtttttaccagctaataactnnnnnnntaaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt |
374 |
Q |
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| T |
44476167 |
ttaattgctgtttgtttttaccagctaataactaagaaa-taaacatatttctttataaaaaatgaatgatcaagttaaattaatatcttatttttaatt |
44476265 |
T |
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| Q |
375 |
atgagattaattaatatttgtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaatttta |
474 |
Q |
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| T |
44476266 |
atgag----attaatatttgtctcttaaactacacatatggacactaattttagttaattgcatagaact---agaatatttttaatataacaaatttta |
44476358 |
T |
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| Q |
475 |
gtatcatctctgttct |
490 |
Q |
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| T |
44476359 |
gtatcatctctgttct |
44476374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44475648 - 44475740
Alignment:
| Q |
1 |
attgctttcgataaaccgatgacaatgttgatttgctgtannnnnnnctcaatcaaaccattcagcccgtgtaattatttttcttcaactttg |
93 |
Q |
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| T |
44475648 |
attgctttcgataaaccgatgacaatgttgatttgctgtatttttttctcaatcaaaccattcagcccgtgtaattatttttcttcaactttg |
44475740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 488 - 596
Target Start/End: Original strand, 44476521 - 44476629
Alignment:
| Q |
488 |
tcttctcgtatcgtgctataccttcatcaagaaaatacaactaattatacttgtttaacnnnnnnnnttggtcggaccatacattagtcagaaatgagtt |
587 |
Q |
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| T |
44476521 |
tcttctcacatcgtgctataccttcatcaaaaaaatacaactaattatacttgtttaacaaaaaaaattggtcggaccatacattagtcagaaacgagtt |
44476620 |
T |
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| Q |
588 |
ttggatatt |
596 |
Q |
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| T |
44476621 |
ttggatatt |
44476629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 44476026 - 44476105
Alignment:
| Q |
116 |
cttcaacttcaactcgttcattatattcctttaggt--tccctctggcgccgattattgtcaaaggtcaaatcttcaataa |
194 |
Q |
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| T |
44476026 |
cttcaacttcaactcgttcgttc-attcctttaggtgttccctctggcgccgattattgtcaaaggtcaaatcttcaataa |
44476105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 44471698 - 44471777
Alignment:
| Q |
394 |
gtctcttacactacacatatggacactaattttagttaattgcatagaactagaagaatatttttaatataacaaattttagtatc |
479 |
Q |
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| T |
44471698 |
gtctcttacactacatata--gagactaattttagttaattgcatagaactataata----ttttaatataacaaattctagtatc |
44471777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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