View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_low_12 (Length: 284)
Name: NF19635_low_12
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 44108932 - 44109191
Alignment:
| Q |
13 |
aatatctcttacacacttacaaattgcaacatttttatccttgtacaaaattaagaaactcttcattctgacaaaatgaatgtagaaacttggctcggca |
112 |
Q |
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| T |
44108932 |
aatatctcttacacacttacaaattgcaacatttttatccttgtacaaaattaagaaactcttcattctgacaaaatgaatgtagaaacttggctcagca |
44109031 |
T |
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| Q |
113 |
tgacatactacaggagaacaatcaaatagcaagcattctcatcgattgtggc-----tcgctatcaatgataattaacacttaaatgtcatgactgaata |
207 |
Q |
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| T |
44109032 |
tgacatactactggagaataatc-aatagcaagcattctcatcgattgtggctcgcttcgctatcaatgataattaacacttaaatgtcatgactgaata |
44109130 |
T |
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| Q |
208 |
tacaaaaagtacacaaatacaatttcaagtgcatatgaaatctcttactcacccaccatta |
268 |
Q |
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| T |
44109131 |
tacaaaaagtacacaaatacaatttcaagtgcatatgaaatctcttactcacccaccatta |
44109191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 44146531 - 44146705
Alignment:
| Q |
87 |
aatgaatgtagaaacttggctcggcatgacatactacaggagaacaatcaaatagcaagcattctcatcgattgtggctcgctatcaatgataattaaca |
186 |
Q |
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| T |
44146531 |
aatgaatgttgaaacctgactcagcatgaaatactacaggggaataatcaaatagcaagcattctcattgattgtggctcagcatcaacgataattaaca |
44146630 |
T |
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| Q |
187 |
cttaaatgtcatgactgaatatacaaaaagtacacaaatacaatttcaagtgcatatgaaatctcttactcaccc |
261 |
Q |
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| T |
44146631 |
cttaaatgtcatgactgaatatacaaaaagcacagaaatacaatttcaagtgcatatgaaatctcttactcaccc |
44146705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 44145853 - 44145900
Alignment:
| Q |
33 |
aaattgcaacatttttatccttgtacaaaattaagaaactcttcattc |
80 |
Q |
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| T |
44145853 |
aaattgcaacatttttatccttgtacaaaatgaagaaactcttcattc |
44145900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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