View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19635_low_14 (Length: 250)

Name: NF19635_low_14
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19635_low_14
NF19635_low_14
[»] chr8 (6 HSPs)
chr8 (4-243)||(4956369-4956608)
chr8 (146-237)||(19950942-19951033)
chr8 (130-190)||(4241564-4241624)
chr8 (130-190)||(17021742-17021802)
chr8 (130-190)||(17552179-17552239)
chr8 (130-179)||(4540985-4541034)
[»] chr6 (2 HSPs)
chr6 (130-237)||(5496366-5496473)
chr6 (130-190)||(16834720-16834780)
[»] chr5 (5 HSPs)
chr5 (130-190)||(558246-558306)
chr5 (130-190)||(36425115-36425175)
chr5 (130-190)||(36940748-36940808)
chr5 (130-190)||(41998192-41998252)
chr5 (130-190)||(39519862-39519922)
[»] chr4 (2 HSPs)
chr4 (130-190)||(37263122-37263182)
chr4 (134-195)||(13060945-13061006)
[»] chr3 (5 HSPs)
chr3 (130-190)||(3674116-3674176)
chr3 (130-190)||(18468689-18468749)
chr3 (130-190)||(23664680-23664740)
chr3 (130-192)||(8884720-8884782)
chr3 (130-179)||(16452891-16452940)
[»] chr2 (3 HSPs)
chr2 (130-190)||(9183976-9184036)
chr2 (130-190)||(17973909-17973969)
chr2 (130-190)||(30652391-30652451)
[»] chr1 (2 HSPs)
chr1 (130-190)||(10136802-10136862)
chr1 (130-190)||(25845233-25845293)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 4956369 - 4956608
Alignment:
Q  4 aaaaacttgtgcattaaaggcacttaacgtttataccgatataatgaacattatcaatagtttttcctaaaatttcaatatgagtgtttgccacttctac 103  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956369 aaaagcttgtgcatcaaaggcccttaacgtttataccgatataatgaacattatcaatagtttttcctaaaatttcaatatgagtgtttgccacttctac 4956468  T
Q  104 attctccgaggtaagttcatcatgaactaggtactctactctacatagagagtagatctcattatgagtttatattctctcatccttttatcgccttagg 203  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956469 attctccgaggtaagtccatcatgaactaggtactctactctacatagagagtagatctcattatgagtttatattctctcatccttttatcgccttagg 4956568  T
Q  204 aaccatttttcttttgatttattatagcatgttcttctca 243  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4956569 aaccatttttcttttgatttattatagcatgttcatctca 4956608  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 19950942 - 19951033
Alignment:
Q  146 acatagagagtagatctcattatgagtttatattctctcatccttttatcgccttaggaaccatttttcttttgatttattatagcatgttc 237  Q
    ||||||||  |||||||||||| |||||||||||  |||| ||| ||||||| | ||||| ||||  |||| ||||||||||||||||||||    
T  19950942 acatagagtatagatctcattaagagtttatattaactcaacctcttatcgcttcaggaatcattcctcttatgatttattatagcatgttc 19951033  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 4241624 - 4241564
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  4241624 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 4241564  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 17021742 - 17021802
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  17021742 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 17021802  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 17552179 - 17552239
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  17552179 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 17552239  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 4541034 - 4540985
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatatt 179  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||||||||    
T  4541034 ctaggtactccactccacatagagtatagatctcattaagagtttatatt 4540985  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 5496366 - 5496473
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatccttttatcgccttaggaaccatttttcttttgatttattata 229  Q
    |||||||||| |||| ||||||||  || ||||||||| |||||| |||| ||||| ||| |||| || | ||||| |||   |||| ||||||||||||    
T  5496366 ctaggtactccactccacatagagtatatatctcattaagagtttctattatctcaacctcttattgcttcaggaatcatgcctcttatgatttattata 5496465  T
Q  230 gcatgttc 237  Q
    ||||||||    
T  5496466 gcatgttc 5496473  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 16834780 - 16834720
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  16834780 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 16834720  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 558246 - 558306
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  558246 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 558306  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 36425115 - 36425175
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  36425115 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 36425175  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 36940808 - 36940748
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  36940808 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 36940748  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 41998192 - 41998252
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  41998192 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 41998252  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 39519862 - 39519922
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||   ||||||||||| |||||| |||| ||||||||||    
T  39519862 ctaggtactccactccacatagagtagagatctcattaagagtttctattatctcatcctt 39519922  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 37263182 - 37263122
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  37263182 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 37263122  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 13060945 - 13061006
Alignment:
Q  134 gtactctactctacatagagagtagatctcattatgagtttatattctctcatccttttatc 195  Q
    |||||| |||| ||||||||  |||||||||||| |||||| |||| |||||||||| ||||    
T  13060945 gtactccactcaacatagagtatagatctcattaagagtttctattatctcatccttctatc 13061006  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 3674116 - 3674176
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  3674116 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 3674176  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 18468689 - 18468749
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  18468689 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 18468749  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 23664740 - 23664680
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  23664740 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 23664680  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 8884720 - 8884782
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctttt 192  Q
    |||||||||| |||| || |||||  |||||||||||| |||||| |||| ||||||||||||    
T  8884720 ctaggtactccactccacgtagagtatagatctcattaagagtttctattatctcatcctttt 8884782  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 16452940 - 16452891
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatatt 179  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||||||||    
T  16452940 ctaggtactccactccacatagagtatagatctcattaagagtttatatt 16452891  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 9184036 - 9183976
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  9184036 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 9183976  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 17973969 - 17973909
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  17973969 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 17973909  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 30652391 - 30652451
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  30652391 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 30652451  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 10136802 - 10136862
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  10136802 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 10136862  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 25845233 - 25845293
Alignment:
Q  130 ctaggtactctactctacatagagagtagatctcattatgagtttatattctctcatcctt 190  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||| |||| ||||||||||    
T  25845233 ctaggtactccactccacatagagtatagatctcattaagagtttctattatctcatcctt 25845293  T

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