View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_low_2 (Length: 572)
Name: NF19635_low_2
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 3468748 - 3468177
Alignment:
| Q |
1 |
tgcacaatgataagcgtgcatattgttggctaagtcaagaggatgtgatgcgctacctcctcaactcaatcgggacattttccaatactcctgcacaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3468748 |
tgcacaatgataagcgtgcatattgttggctaagtcaagaggatgtaatgcgctacctcctcaactcaatcgggacattttccgatactcctgcacaatc |
3468649 |
T |
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| Q |
101 |
catcgacaaactcgacattatagacacacaaaatctatattttctttaccttgatgaccctgcatcctctgctttagagcttctcactgcttccattgtg |
200 |
Q |
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| T |
3468648 |
catcgacaaactcgacattatagacacacaaaatctatattttctttactttgatgaccctgcatcctctgctttagagcttctcactgcttccattgtg |
3468549 |
T |
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| Q |
201 |
caccaatcctctgttgcagtcgttgatccgcaaggcaaactcattggagaaatctcaccctttattttgaattcttgtgatgaaattgttgtccctgcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |
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| T |
3468548 |
caccaatcctctgttgcagtcgttgatccgcaaggcaaactcattggagaaatctcaccctttatgttgaactcttgtgatgaaattgatgtccctgcaa |
3468449 |
T |
|
| Q |
301 |
ttgcaactctctcagctggtgatctcttagcttacatcgactgcggtggtccaccggaggatttagttcagctggtaaaggagaggctgcatgagcagaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3468448 |
ttgcaactctctcagctggtgatctcttagcttacatcgactgcggtggtccaccggaggatttagttcagctggtaaaggagaggctgcatgagcagaa |
3468349 |
T |
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| Q |
401 |
tctcgacaacgcggctgtggagttacttggggagggatcagagctttcatcttggtcttcgttttcttcgacttcatcggaggaagatatttgctcatta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3468348 |
tctcgacaacgcggctgtggagttacttggggagggatcagagctttcatcttggtcttcgttttcttcgacttcatcggaggaagatatttgctcatta |
3468249 |
T |
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| Q |
501 |
gggaagaattggaaacttggaggatactcttcaaggattatgagaaggtcagaggctattgtttgttaccct |
572 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3468248 |
gggaagaattggaaacttggaggattctcttcaaggattatgagaaggtcagaggctattgtttgttaccct |
3468177 |
T |
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