View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_low_6 (Length: 344)
Name: NF19635_low_6
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 38379279 - 38379593
Alignment:
| Q |
12 |
agagacaagaagagaagttgatgaaggtatttaggcacataataa---agatatatatgatactaattatgaaaatgagattaatattttagagaagcta |
108 |
Q |
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| T |
38379279 |
agagacaagaagagaagttgatgaaggtatttaggcacataataatgaagatatatatgatactaattatgaaaatgagattaatattttagagaagcta |
38379378 |
T |
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| Q |
109 |
attaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataagcc |
208 |
Q |
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| T |
38379379 |
attaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataagcc |
38379478 |
T |
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| Q |
209 |
attctccccaaataggtaaataacaatggatcaattgtacatacatacatactcaaatgcgcacaaagaaagagaagtgtggtgacccgtgatacaattg |
308 |
Q |
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| T |
38379479 |
attctccccaaataggtaaataacaatggatcaattgtatatacatacatactcaaatgcgcaaaaagaa--agaagtgtggtgacccgtgatacaattg |
38379576 |
T |
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| Q |
309 |
tggattccacatagaat |
325 |
Q |
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| T |
38379577 |
gggattccacatagaat |
38379593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 29206910 - 29206685
Alignment:
| Q |
12 |
agagacaagaagagaagttgatgaaggtatttaggcacataataaagat-----atatatgatactaattatgaaaatgagattaatattttagagaagc |
106 |
Q |
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| T |
29206910 |
agagacaagaggagaagttgatgaaggtatt-aggaacataataattaatcaagatatatgatactaatagtgagagtgagagcaatatttta------c |
29206818 |
T |
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| Q |
107 |
taattaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataag |
206 |
Q |
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| T |
29206817 |
taattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttactttgataag |
29206718 |
T |
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| Q |
207 |
ccattctccccaaataggtaaataacaatggat |
239 |
Q |
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| T |
29206717 |
ccattcttcccacaaaggtaaataacaaaggat |
29206685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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