View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_low_7 (Length: 342)
Name: NF19635_low_7
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 9072535 - 9072855
Alignment:
| Q |
19 |
taactgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaat |
118 |
Q |
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| T |
9072535 |
taactgctgaagatttacaagttggttgtcatgtgaaatttattactcccacttctttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaat |
9072634 |
T |
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| Q |
119 |
acaaaaggcattagtgtatggatttgagatttcatggttgcgtcttccttgtcagaattattgtgaaaagtcagagctctgttacttcgacactaccaca |
218 |
Q |
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| T |
9072635 |
acaaaaggcattagtgtatggatttgagatttcatggttgcgtcttccttgtcagaattattgtgaaaagtccgagctctgttacttcgacactaccaca |
9072734 |
T |
|
| Q |
219 |
cagaaacttggatgtaatgggcactattgcttcactcttatgggattttcagagagtaataattgtggtaaagatccaccatttgaacnnnnnnnatctc |
318 |
Q |
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| T |
9072735 |
cagaaacttggatgcaatgtgcactattgcttcactcttatgggattttcagagagtaataattgtggtaaagatccaccatttgaactttttttatctc |
9072834 |
T |
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| Q |
319 |
ttcattacaaatttttagtat |
339 |
Q |
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||| ||||||||||||||||| |
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| T |
9072835 |
ttcgttacaaatttttagtat |
9072855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 8864373 - 8864531
Alignment:
| Q |
18 |
ttaactgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaa |
117 |
Q |
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| T |
8864373 |
ttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacttcttggtcaggtttgcaaagaaatcaagtactttcctatgatgtca |
8864472 |
T |
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| Q |
118 |
tacaaaaggcattagtgtatggatttgagatttcatggttgcgtcttccttgtcagaat |
176 |
Q |
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| || || ||||| || ||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
8864473 |
tgcacaaagcattggtatatggatttgatatttcatggttcaatcttccttgtaagaat |
8864531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 8971994 - 8971840
Alignment:
| Q |
18 |
ttaactgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaa |
117 |
Q |
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|||| |||| ||||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||| || ||||| | || | || |||||| | |
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| T |
8971994 |
ttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacatctttgttgggtttggaaagaaataagttactttcctatgatatca |
8971895 |
T |
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| Q |
118 |
tacaaaaggcattagtgtatggatttgagatttcatggttgcgtcttccttgtca |
172 |
Q |
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| T |
8971894 |
ttcacaaggcattagtctatggatttgagatttcatggatgcatctttcttgtca |
8971840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 9007022 - 9006868
Alignment:
| Q |
18 |
ttaactgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaa |
117 |
Q |
| |
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|||| |||| ||||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||| || ||||| | || | || |||||| | |
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| T |
9007022 |
ttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacatctttgttgggtttggaaagaaataagttactttcctatgatatca |
9006923 |
T |
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| Q |
118 |
tacaaaaggcattagtgtatggatttgagatttcatggttgcgtcttccttgtca |
172 |
Q |
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| || ||||||||||| ||||||||||||||||||||| ||| |||| ||||||| |
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| T |
9006922 |
ttcacaaggcattagtctatggatttgagatttcatggatgcatctttcttgtca |
9006868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 9136761 - 9136895
Alignment:
| Q |
23 |
tgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaatacaa |
122 |
Q |
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|||| ||||||| |||||||| ||||||||||||| ||||||| ||||||| | |||||||||| |||||||| || | ||||||||| || || |
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| T |
9136761 |
tgctcaagattttcaagttggctgtcatgtgaaatcagttactctaacttcttggtcgggtttgcaaagaaatcaattacttacatatgatgtcattcat |
9136860 |
T |
|
| Q |
123 |
aaggcattagtgtatggatttgagatttcatggtt |
157 |
Q |
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||||| |||||||||||||||||| |||||||||| |
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| T |
9136861 |
aaggcgttagtgtatggatttgaggtttcatggtt |
9136895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9065258 - 9065182
Alignment:
| Q |
18 |
ttaactgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaagggtttgcaaggaaa |
94 |
Q |
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||||| ||||| || || ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
9065258 |
ttaacggctgaggactttcaagttggttgtcatgtgaaattggttactcccacttctttgtctggtttgcaaagaaa |
9065182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 9100075 - 9100210
Alignment:
| Q |
23 |
tgctgaagatttacaagttggttgtcatgtgaaatttgttactcccacttctttgaaggg---tttgcaaggaaatcaagtaatatcatatgatgaaata |
119 |
Q |
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|||| ||||||| |||||||||||||||| ||| || || |||||||||| | | ||| ||||||| ||||||||||| | ||||||||| || |
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| T |
9100075 |
tgctcaagattttcaagttggttgtcatgcgaagttagtggctcccacttcatggttgggaaatttgcaaagaaatcaagtactttcatatgatatcatt |
9100174 |
T |
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| Q |
120 |
caaaaggcattagtgtatggatttgagatttcatgg |
155 |
Q |
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| T |
9100175 |
cataaggcgttagtatatggatttgagatttcatgg |
9100210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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