View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19635_low_8 (Length: 335)
Name: NF19635_low_8
Description: NF19635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19635_low_8 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 11468116 - 11468426
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11468116 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagat |
11468215 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
11468216 |
tccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagatt |
11468315 |
T |
|
| Q |
210 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11468316 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
11468415 |
T |
|
| Q |
310 |
catatccagag |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
11468416 |
catatccagag |
11468426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 11523345 - 11523035
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11523345 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagat |
11523246 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
11523245 |
tccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagatt |
11523146 |
T |
|
| Q |
210 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11523145 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
11523046 |
T |
|
| Q |
310 |
catatccagag |
320 |
Q |
| |
|
||||||||||| |
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|
| T |
11523045 |
catatccagag |
11523035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 11445126 - 11445427
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | |||| |
|
|
| T |
11445126 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11445225 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
|||||||| |||||||||| | || || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| ||| |||| |||||||| |
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|
| T |
11445226 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11445325 |
T |
|
| Q |
210 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
309 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| || |||| || ||| | || || ||||| ||||| | || ||||||||||||||||||||| |
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|
| T |
11445326 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgcca |
11445425 |
T |
|
| Q |
310 |
ca |
311 |
Q |
| |
|
|| |
|
|
| T |
11445426 |
ca |
11445427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 11547964 - 11547663
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | |||| |
|
|
| T |
11547964 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11547865 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
|||||||| |||||||||| | || || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| ||| |||| |||||||| |
|
|
| T |
11547864 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11547765 |
T |
|
| Q |
210 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
309 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| || |||| || ||| | || || ||||| ||||| | || ||||||||||||||||||||| |
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|
| T |
11547764 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgcca |
11547665 |
T |
|
| Q |
310 |
ca |
311 |
Q |
| |
|
|| |
|
|
| T |
11547664 |
ca |
11547663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 11507733 - 11507500
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | |||| |
|
|
| T |
11507733 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11507634 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
| |||||| |||||||||| | || || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| ||| |||| |||||||| |
|
|
| T |
11507633 |
ttcaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11507534 |
T |
|
| Q |
210 |
cagaatctttgttaagaaagttaaaaaatgtctc |
243 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| |
|
|
| T |
11507533 |
cagtatctttgttaagatagtcccaaaatgtctc |
11507500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 34784539 - 34784321
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || |||||| |||||||||| || |||| ||| | || || ||||| || |||||||| | ||| |
|
|
| T |
34784539 |
aacctgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagat |
34784440 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
||||||||||||||||||| | || | |||||||||||||||||| |||||||| ||||| || ||||||||||||| | || |||||| |
|
|
| T |
34784439 |
tccaaaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagatt |
34784340 |
T |
|
| Q |
210 |
cagaatctttgttaagaaa |
228 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34784339 |
cagaatctttgttaagaaa |
34784321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 34776327 - 34776217
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||| ||||| || ||||| | ||| ||||| ||||||||||||||||| ||| | ||||| |||||| | |||||||| | |||| |
|
|
| T |
34776327 |
aacctgtggttgatcaaaaacagtacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaacatcaacaagagac |
34776228 |
T |
|
| Q |
110 |
tccaaaccctc |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
34776227 |
tccaaaccctc |
34776217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 2390 - 2157
Alignment:
| Q |
10 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagac |
109 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | |||| |
|
|
| T |
2390 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
2291 |
T |
|
| Q |
110 |
tccaaaccctcaaacacatagctacagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacaaactaagtttatcagatt |
209 |
Q |
| |
|
||||||| |||||||||| | || || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| ||| |||| |||||||| |
|
|
| T |
2290 |
cccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
2191 |
T |
|
| Q |
210 |
cagaatctttgttaagaaagttaaaaaatgtctc |
243 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| |
|
|
| T |
2190 |
cagtatctttgttaagatagtcccaaaatgtctc |
2157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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