View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19636_high_1 (Length: 1092)

Name: NF19636_high_1
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19636_high_1
NF19636_high_1
[»] chr5 (10 HSPs)
chr5 (382-834)||(16807415-16807869)
chr5 (13-392)||(16807007-16807383)
chr5 (868-955)||(16807864-16807951)
chr5 (672-765)||(4872587-4872680)
chr5 (672-771)||(9726069-9726168)
chr5 (710-771)||(35679242-35679303)
chr5 (672-860)||(25688964-25689150)
chr5 (672-720)||(17550863-17550911)
chr5 (929-1026)||(17551103-17551200)
chr5 (1003-1056)||(24771351-24771404)
[»] chr4 (6 HSPs)
chr4 (675-771)||(8029661-8029757)
chr4 (671-771)||(19102661-19102760)
chr4 (672-771)||(19107291-19107390)
chr4 (672-759)||(12875110-12875197)
chr4 (672-771)||(47244824-47244923)
chr4 (937-1041)||(31530875-31530979)
[»] chr8 (3 HSPs)
chr8 (672-771)||(22714311-22714410)
chr8 (671-771)||(7002330-7002430)
chr8 (935-1028)||(42157798-42157891)
[»] chr1 (6 HSPs)
chr1 (672-771)||(23192142-23192241)
chr1 (672-765)||(16036306-16036399)
chr1 (672-771)||(39587674-39587773)
chr1 (673-771)||(40166644-40166742)
chr1 (673-771)||(12260671-12260768)
chr1 (687-756)||(46697032-46697101)
[»] scaffold0009 (1 HSPs)
scaffold0009 (672-771)||(147707-147806)
[»] chr2 (6 HSPs)
chr2 (672-771)||(28603780-28603879)
chr2 (672-771)||(42925973-42926072)
chr2 (697-771)||(31327433-31327507)
chr2 (697-771)||(31334154-31334228)
chr2 (970-1039)||(29907329-29907398)
chr2 (925-1015)||(40033675-40033764)
[»] chr3 (7 HSPs)
chr3 (673-771)||(29350921-29351019)
chr3 (672-771)||(2207115-2207214)
chr3 (718-771)||(3656591-3656644)
chr3 (935-1019)||(7806480-7806564)
chr3 (671-771)||(13155916-13156016)
chr3 (950-1035)||(1741051-1741135)
chr3 (1003-1056)||(55128838-55128891)
[»] chr7 (8 HSPs)
chr7 (697-771)||(13313628-13313702)
chr7 (672-771)||(26286460-26286559)
chr7 (704-771)||(30258783-30258850)
chr7 (925-1028)||(18331328-18331430)
chr7 (929-1017)||(14782913-14783001)
chr7 (929-1017)||(15232942-15233030)
chr7 (673-720)||(15233222-15233269)
chr7 (672-721)||(4580210-4580259)
[»] scaffold0054 (1 HSPs)
scaffold0054 (672-771)||(26136-26234)
[»] chr6 (5 HSPs)
chr6 (672-771)||(12689666-12689765)
chr6 (672-771)||(19674467-19674566)
chr6 (711-771)||(22610193-22610253)
chr6 (970-1053)||(5740751-5740834)
chr6 (705-771)||(12799302-12799368)
[»] scaffold0002 (1 HSPs)
scaffold0002 (671-771)||(150972-151072)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 382 - 834
Target Start/End: Original strand, 16807415 - 16807869
Alignment:
Q  382 tatatatatatcacatgcatgacaacaacgctgtcgtctagctggacctaggccaaaaagnnnnnnnnnnnn---agcagtgctattaagcacgacacaa 478  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||               ||||||||||||||||| |||||||    
T  16807415 tatatatatatcacacgcatgacaacaacgccgtcgtctagctggacctgggccaaaaagtttttttttttttttagcagtgctattaagcatgacacaa 16807514  T
Q  479 aaaatcaacgacaaacccacgacttctcaaattagtggatgaaaaacaaaacatggaggagagagaataaaagaagctttgtaccgtttgcatccaagg- 577  Q
    |||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16807515 aaac-caacgacaaacccacaacttctcaaattagtggatgacaaacaaaacatggaggagagagaataaaagaagctttgtaccgtttgcatccaaggg 16807613  T
Q  578 ttgtaaagcgtcgtgctgttttcatgcttgtttgttgtcgtgccatcaagcaatattcnnnnnnnnnatcacttaaaaattcttcttattcgacgtttgt 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||||||    
T  16807614 ttgtaaagcgtcgtgctgttttcatgcttgtttgttgtcgtgccatcaagca-tattctttttttttatcacttaaaaattcttcttattcgacgtttgt 16807712  T
Q  678 tacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagagggctcg 777  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16807713 tacttgaactgatccgcgagttgcttgatttttaagtttacttaattcttaagtttcttcagtttagttacaaactttccctataaaatgagagggctcg 16807812  T
Q  778 catatttcatttggaacactaaaaataattctaaaacttcgaatatttttcttctct 834  Q
    | |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  16807813 cgtatttcatttggaacactgaaaagaattctgaaacttcgaatatttttcttctct 16807869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 16807007 - 16807383
Alignment:
Q  13 agcatagggtatggggtgtggttgattagttgggttggctaaattatgtattttttcgtttggtggaattgacttttaatattatatacaaaatatacag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16807007 agcatagggtatggggtgtggttgattagttgggttggctaaattatgtattttttcgtttggtggaattgacttttaatattatatacaaaatatacag 16807106  T
Q  113 attaattactctataaaatgtacannnnnnnaataagaaatcatatattattaaaagcaagccaatacaagaagtgcaagaccgacaattgttggaacac 212  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16807107 attaattactctataaaatgtacatttttttaataagaaatcatatattattaaaagcaagccaatacaagaagtgcaagaccgacaattgttggaacac 16807206  T
Q  213 tagtgcaaatgagtggaagtttaaaagagtaaacataacatctcatatagactggaattagtgctgtgtgaattgnnnnnnntatctcttataggataga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||        |||||||||||||||||    
T  16807207 tagtgcaaatgagtggaagtttaaaagagtaaacataacatctcacatagactgaaattagtgttgtgtgaattgaaaaaac-atctcttataggataga 16807305  T
Q  313 tcacatannnnnnnnnnnngagagaggatagatcatatatattagtagtgtgtagtgcgcgtgtgtgtctatatatatat 392  Q
    |||||||            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16807306 tcacata--tattttttttgagagaggatagatcatatatattagtagtgtgtagtgcgcgtgtgtgtatatatatatat 16807383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 868 - 955
Target Start/End: Original strand, 16807864 - 16807951
Alignment:
Q  868 ttctcttcatctattctttctgtcgtttcggtttcgagtgatatttgtatcattttaagtggtatccataccatattaaggatgttat 955  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  16807864 ttctcttcatcttttctttctgtccttttggtttcgagtgatatttgtatcattttaagtgctatccataccatattaagggtgttat 16807951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 672 - 765
Target Start/End: Complemental strand, 4872680 - 4872587
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaa 765  Q
    ||||||||||||| ||| |  | | ||||||| |||| |||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||    
T  4872680 gtttgttacttgagctggtacgtgggttgcttaatttttaagtttatttaattcttaagtttctccaaattagttacaaactctccctataaaa 4872587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 9726069 - 9726168
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||||| |||| ||||| || | ||||||| |||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| ||||| |||||    
T  9726069 gtttgttatttgagctgatatgtgggttgcttaatttttaaatttacttaattctcaagtttctccaaattagttacaaactctccctgtaaaaggagag 9726168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 771
Target Start/End: Original strand, 35679242 - 35679303
Alignment:
Q  710 taagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||| |||||    
T  35679242 taagtttacttaattcttaagtctctccaaattagttacaaactctccctataaaaggagag 35679303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 672 - 860
Target Start/End: Original strand, 25688964 - 25689150
Alignment:
Q  672 gtttgttacttgaac-tgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 770  Q
    ||||||||||||||| |||| || | ||||||| | || ||||||||||||| | |||||||||| |   || |||||||||| | ||||||||| ||||    
T  25688964 gtttgttacttgaacctgatttgtgggttgcttaacttttaagtttacttaattattaagtttctacggatttgttacaaactttacctataaaaggaga 25689063  T
Q  771 gggctcgcatatttcatttggaacactaaaaataattctaaaacttcgaatatttttcttctctctccccctttcgaattatgttgacga 860  Q
      |||||| || ||||||||   |||  ||||  ||||| ||||||| |||  ||||||||||||| ||| |||||| || |||||||||    
T  25689064 --gctcgcctagttcatttgactcaccgaaaagtattctgaaacttcaaatccttttcttctctct-cccttttcgatttgtgttgacga 25689150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 672 - 720
Target Start/End: Original strand, 17550863 - 17550911
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttactt 720  Q
    |||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  17550863 gtttgttacttgaactaatctgcgggttgcttaatttttaagtttactt 17550911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 929 - 1026
Target Start/End: Original strand, 17551103 - 17551200
Alignment:
Q  929 gtatccataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaagacg 1026  Q
    |||| ||||||||||| ||||||||| ||||| |||||||||||| | || | ||||||||   | ||||||||||  | ||||||||| || |||||    
T  17551103 gtattcataccatattgaggatgttaattctcaaacgattatctacgttgcaataggtaatggtacagtttgaacttagctgttttatcgtggagacg 17551200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1003 - 1056
Target Start/End: Original strand, 24771351 - 24771404
Alignment:
Q  1003 ctgggttgttttatcctgaagacggcgcagttgatagtccatcttacacaactt 1056  Q
    |||||||||||||||||| ||||||||| |||| ||||| | ||| ||||||||    
T  24771351 ctgggttgttttatcctggagacggcgcggttgttagtctaccttgcacaactt 24771404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 675 - 771
Target Start/End: Original strand, 8029661 - 8029757
Alignment:
Q  675 tgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||||||| |||||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  8029661 tgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 8029757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 671 - 771
Target Start/End: Complemental strand, 19102760 - 19102661
Alignment:
Q  671 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 770  Q
    |||||||||||||| ||||| || | ||||||| |||| |||||||||| || |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  19102760 cgtttgttacttgagctgatatgtgggttgcttaatttttaagtttact-aattcttaagtttctccaaattagttacaaactctccctataaaaggaga 19102662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 672 - 771
Target Start/End: Complemental strand, 19107390 - 19107291
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| ||||| || | ||||||| |||| ||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||||||| |||||    
T  19107390 gtttgttacttgagctgatatgtgggttgcttaatttttaagtttacttaattcttaaatttctccaaattagttacaaattctccctataaaaggagag 19107291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 672 - 759
Target Start/End: Complemental strand, 12875197 - 12875110
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccct 759  Q
    |||||||||||||  |||| || ||||||||| ||||||| |||||||||| ||||||||||||| |  |||||||||||||||||||    
T  12875197 gtttgttacttgagttgatatgtgagttgcttaatttctacgtttacttaattcttaagtttctttatattagttacaaactctccct 12875110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 672 - 771
Target Start/End: Complemental strand, 47244923 - 47244824
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| || ||||| | ||||||| ||||  |||||||||||| |||||||||||| ||| | ||||||||| ||||||||||||| |||||    
T  47244923 gtttgttacttgagcttatctgtgggttgcttaattttaaagtttacttaattcttaagtttctccaaatcagttacaaattctccctataaaaggagag 47244824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 937 - 1041
Target Start/End: Complemental strand, 31530979 - 31530875
Alignment:
Q  937 accatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaagacggcgcagttga 1036  Q
    |||||||| ||| ||||| ||||| ||| ||||||||||||| |  ||||||||||| ||||| ||||| | |||||||| ||||||  | || ||||||    
T  31530979 accatattgagggtgttaattctcaaactattatctatggtgcaaaaggtaatcacacagtttcaactgagctgttttattctgaaggagacggagttga 31530880  T
Q  1037 tagtc 1041  Q
    |||||    
T  31530879 tagtc 31530875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 5e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 22714311 - 22714410
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| |||||||| | ||||||| |||||||||||||||||| |||||||||||| ||| ||| |||||||||| |||||||||| |||||    
T  22714311 gtttgttacttgagctgatctgtgggttgcttaatttctaagtttacttaattcttaagtttctccaaattatttacaaactccccctataaaaggagag 22714410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 671 - 771
Target Start/End: Complemental strand, 7002430 - 7002330
Alignment:
Q  671 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 770  Q
    |||||||||||||| ||||| || | ||||| | |||| ||||||||||||| | |||||||||| ||| ||| ||||||||| || |||||||| ||||    
T  7002430 cgtttgttacttgagctgatttgtgggttgcgtaatttttaagtttacttaattattaagtttctccaaattatttacaaactatctctataaaaggaga 7002331  T
Q  771 g 771  Q
    |    
T  7002330 g 7002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 935 - 1028
Target Start/End: Original strand, 42157798 - 42157891
Alignment:
Q  935 ataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaagacggc 1028  Q
    |||||||||| ||| ||||| |||| ||||||||||||||  ||  | ||||||||||| ||||| || || |||||||||||||| |||||||    
T  42157798 ataccatatttagggtgttaattcttgaacgattatctataatgccgaaggtaatcacacagtttaaagtgagttgttttatcctggagacggc 42157891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 5e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 23192142 - 23192241
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| |||||||| | ||||||| |||| ||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||| |||||    
T  23192142 gtttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattctttagtttctccaaattagttacaaactctccctataaaaggagag 23192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 672 - 765
Target Start/End: Complemental strand, 16036399 - 16036306
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaa 765  Q
    ||||||| ||||| |||||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  16036399 gtttgtttcttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaa 16036306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 39587674 - 39587773
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| ||||| |||| ||||||| |||| ||||||||||||| ||||| |||||| ||| ||||||||||||||||||| ||||| |||||    
T  39587674 gtttgttacttgagctgatatgcgggttgcttaatttttaagtttacttaattcttatgtttctccaaattagttacaaactctccctgtaaaaggagag 39587773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 673 - 771
Target Start/End: Complemental strand, 40166742 - 40166644
Alignment:
Q  673 tttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||||||||| |||||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||| ||| | |||||| |||| |||||    
T  40166742 tttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttataaattatccctaaaaaaggagag 40166644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 673 - 771
Target Start/End: Complemental strand, 12260768 - 12260671
Alignment:
Q  673 tttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||||||||| ||||| || ||||||||| ||||  ||||| |||||| |||||||||| | ||| ||||||||||||||| ||||||||| |||||    
T  12260768 tttgttacttgagctgatatgtgagttgcttaattttgaagttgacttaattcttaagtttttccaaattagttacaaactct-cctataaaaggagag 12260671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 687 - 756
Target Start/End: Complemental strand, 46697101 - 46697032
Alignment:
Q  687 tgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctc 756  Q
    ||||||| | ||||||| ||||||||||| |||||| |||||||||||||||| ||||||| ||||||||    
T  46697101 tgatctgtgtgttgcttaatttctaagttgacttaattcttaagtttcttcaaattagttaaaaactctc 46697032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 147707 - 147806
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| || ||||| ||||||||| |||| ||||||||| ||| |||||||||||| ||| ||||||||||||||||| ||||||| |||||    
T  147707 gtttgttacttgagcttatctgtgagttgcttaatttttaagtttacctaattcttaagtttctccaaattagttacaaactctccatataaaaggagag 147806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 672 - 771
Target Start/End: Complemental strand, 28603879 - 28603780
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| ||||| ||   ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  28603879 gtttgttacttgagctgatttggaggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaagagag 28603780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 42925973 - 42926072
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||| |||||||| ||||| || ||||||||| |||| ||||||||||||| |||||| |||||  || ||||||||||||||||||||||||| |||||    
T  42925973 gtttcttacttgagctgatatgtgagttgcttaatttttaagtttacttaattcttaaatttctctaaattagttacaaactctccctataaaaggagag 42926072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 697 - 771
Target Start/End: Complemental strand, 31327507 - 31327433
Alignment:
Q  697 gttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  31327507 gttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 31327433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 697 - 771
Target Start/End: Complemental strand, 31334228 - 31334154
Alignment:
Q  697 gttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  31334228 gttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 31334154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 970 - 1039
Target Start/End: Original strand, 29907329 - 29907398
Alignment:
Q  970 tctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaagacggcgcagttgatag 1039  Q
    |||||| || |||| |||||| |||||||||||||  |||||||||||||| || ||||| |||||||||    
T  29907329 tctatgctgcagtatgtaatcgcatagtttgaactaagttgttttatcctggaggcggcgtagttgatag 29907398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 925 - 1015
Target Start/End: Original strand, 40033675 - 40033764
Alignment:
Q  925 agtggtatccataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgtttta 1015  Q
    ||||||||  ||| |||||| ||| ||||| |||| |||||||||||||| ||| |||||||||||| | | || ||||| ||||||||||    
T  40033675 agtggtatttataacatattgagggtgttaattcttgaacgattatctat-gtgcagtaggtaatcagacaattcgaactaggttgtttta 40033764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 673 - 771
Target Start/End: Complemental strand, 29351019 - 29350921
Alignment:
Q  673 tttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||||||||| ||||| ||   ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  29351019 tttgttacttgacctgatatgtaggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 29350921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 2207115 - 2207214
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||||| |||||||  | ||||||| |||| ||||||||||||| | |||||||||||||| | ||||||||||||||||| ||||| |||||    
T  2207115 gtttgttacttgagctgatctatgggttgcttaatttttaagtttacttaattattaagtttcttcaaatcagttacaaactctccctgtaaaaggagag 2207214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 718 - 771
Target Start/End: Original strand, 3656591 - 3656644
Alignment:
Q  718 cttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||| |||||||||||  ||| ||||||||||||||||||||||||| |||||    
T  3656591 cttaattcttaagtttcaccaaattagttacaaactctccctataaaaggagag 3656644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 935 - 1019
Target Start/End: Original strand, 7806480 - 7806564
Alignment:
Q  935 ataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcct 1019  Q
    |||| ||||| ||| ||||| |||| ||||| |||||||||||| |  |||||||| || | ||||||||| |||||||||||||    
T  7806480 atactatattgagggtgttaattcttgaacggttatctatggtgtaaaaggtaatcgcacaatttgaactgagttgttttatcct 7806564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 671 - 771
Target Start/End: Original strand, 13155916 - 13156016
Alignment:
Q  671 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 770  Q
    |||||| ||||||  |||||||  |||||| || |||| ||||||||||||| |||||||||||| ||  ||| | |  |||||||||||||||| ||||    
T  13155916 cgtttggtacttgcgctgatctctgagttgtttaatttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggaga 13156015  T
Q  771 g 771  Q
    |    
T  13156016 g 13156016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 950 - 1035
Target Start/End: Original strand, 1741051 - 1741135
Alignment:
Q  950 tgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaagacggcgcagttg 1035  Q
    ||||||||||||||||||||  || |||| |||| ||||||| | ||  |||||| ||||||||||||||| || |||||| ||||    
T  1741051 tgttatttctcgaacgattacttacggtgcagtacgtaatcaaacag-gtgaacttggttgttttatcctggaggcggcgcggttg 1741135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1003 - 1056
Target Start/End: Complemental strand, 55128891 - 55128838
Alignment:
Q  1003 ctgggttgttttatcctgaagacggcgcagttgatagtccatcttacacaactt 1056  Q
    ||||| |||||||||||| ||||||||| |||| ||||| | ||||||||||||    
T  55128891 ctgggctgttttatcctggagacggcgcggttgctagtctaccttacacaactt 55128838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 697 - 771
Target Start/End: Original strand, 13313628 - 13313702
Alignment:
Q  697 gttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  13313628 gttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactcttcctataaaatgagag 13313702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 672 - 771
Target Start/End: Original strand, 26286460 - 26286559
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||| |||||||| ||||| || | ||||| | |||| ||||||||||||| |||||||||||| ||| ||||||||||||||||| | ||||| |||||    
T  26286460 gtttcttacttgagctgatatgtgggttgcataatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccttgtaaaaggagag 26286559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 704 - 771
Target Start/End: Complemental strand, 30258850 - 30258783
Alignment:
Q  704 gatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||| ||||||||||||| |||||||||||||| | ||||||||||| |||||||||| || |||||    
T  30258850 gatttttaagtttacttaattcttaagtttcttcgaattagttacaaattctccctatataaggagag 30258783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 925 - 1028
Target Start/End: Original strand, 18331328 - 18331430
Alignment:
Q  925 agtggtatccataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaaga 1024  Q
    |||||||| ||||||||||| ||| ||| ||| ||||||||||||| || |||||||||| || |||||| || |||| || | ||||||||| || |||    
T  18331328 agtggtattcataccatattgagggtgtaatt-ctcgaacgattatttacggtgaagtagatagtcacattgtgtgaattgagatgttttatcatggaga 18331426  T
Q  1025 cggc 1028  Q
    ||||    
T  18331427 cggc 18331430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 929 - 1017
Target Start/End: Complemental strand, 14783001 - 14782913
Alignment:
Q  929 gtatccataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatc 1017  Q
    |||| ||||||||||| ||||||||| ||||| ||||| |||||| | || | ||||||||   | ||||||||||| |||||||||||    
T  14783001 gtattcataccatattgaggatgttaattctcaaacgaatatctacgttgcaataggtaatggtacagtttgaactgagttgttttatc 14782913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 929 - 1017
Target Start/End: Complemental strand, 15233030 - 15232942
Alignment:
Q  929 gtatccataccatattaaggatgttatttctcgaacgattatctatggtgaagtaggtaatcacatagtttgaactgggttgttttatc 1017  Q
    |||| ||||||||||| ||||||||| ||||| ||||| |||||| | || | ||||||||   | ||||||||||| |||||||||||    
T  15233030 gtattcataccatattgaggatgttaattctcaaacgaatatctacgttgcaataggtaatggtacagtttgaactgagttgttttatc 15232942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 673 - 720
Target Start/End: Complemental strand, 15233269 - 15233222
Alignment:
Q  673 tttgttacttgaactgatctgcgagttgcttgatttctaagtttactt 720  Q
    ||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  15233269 tttgttacttgaactaatctgcgggttgcttaatttttaagtttactt 15233222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 672 - 721
Target Start/End: Complemental strand, 4580259 - 4580210
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttactta 721  Q
    ||||||||||||| ||||| || ||||||||| |||| ||||||||||||    
T  4580259 gtttgttacttgagctgatatgtgagttgcttaatttttaagtttactta 4580210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 672 - 771
Target Start/End: Complemental strand, 26234 - 26136
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||||| | ||||| || | ||||||| |||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  26234 gtttgttactt-agctgatttgtgggttgcttaatttttaagttaacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagag 26136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 771
Target Start/End: Complemental strand, 12689765 - 12689666
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||| ||||||| || ||||| | ||||||| |||| ||||||||||||| |||||||||||| ||| | | ||| ||||||||| ||||||| |||||    
T  12689765 gtttgatacttgagcttatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaatcaattataaactctccttataaaaggagag 12689666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 771
Target Start/End: Complemental strand, 19674566 - 19674467
Alignment:
Q  672 gtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||| ||||||  ||||||  | ||||||| |||| ||||||||||| | |||||||||||| ||| ||||||||||| | ||||||||||| |||||    
T  19674566 gtttgtaacttgagttgatctatgggttgcttaatttttaagtttacttgattcttaagtttctccaaattagttacaaaatatccctataaaaagagag 19674467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 711 - 771
Target Start/End: Complemental strand, 22610253 - 22610193
Alignment:
Q  711 aagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    |||||||||||| | |||||||||| ||  |||||||||||||||| |||||||| |||||    
T  22610253 aagtttacttaattattaagtttctccagattagttacaaactctctctataaaaagagag 22610193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 970 - 1053
Target Start/End: Original strand, 5740751 - 5740834
Alignment:
Q  970 tctatggtgaagtaggtaatcacatagtttgaactgggttgttttatcctgaagacggcgcagttgatagtccatcttacacaa 1053  Q
    |||||| || ||||||||||||||| |||||||||| | | |||||||||   | |||||| |||||||||||| ||| |||||    
T  5740751 tctatgttgtagtaggtaatcacattgtttgaactgagctattttatcctagtggcggcgcggttgatagtccaccttgcacaa 5740834  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 705 - 771
Target Start/End: Original strand, 12799302 - 12799368
Alignment:
Q  705 atttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgagag 771  Q
    ||||||||| |||||||| || | |||||||  |  ||||||||||||||||||||||||| |||||    
T  12799302 atttctaagcttacttaattcatgagtttctctagattagttacaaactctccctataaaaggagag 12799368  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 671 - 771
Target Start/End: Complemental strand, 151072 - 150972
Alignment:
Q  671 cgtttgttacttgaactgatctgcgagttgcttgatttctaagtttacttaaatcttaagtttcttcaatttagttacaaactctccctataaaatgaga 770  Q
    |||||| ||||||  |||||||  |||||| || |||| ||||||||||||| |||||||||||| ||  ||| | |  |||||||||||||||| ||||    
T  151072 cgtttggtacttgcgctgatctctgagttgtttaatttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggaga 150973  T
Q  771 g 771  Q
    |    
T  150972 g 150972  T

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