View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19636_low_12 (Length: 251)

Name: NF19636_low_12
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19636_low_12
NF19636_low_12
[»] chr1 (3 HSPs)
chr1 (13-251)||(3558917-3559155)
chr1 (194-251)||(29359709-29359766)
chr1 (194-242)||(49065306-49065354)
[»] chr6 (3 HSPs)
chr6 (153-242)||(20998045-20998135)
chr6 (194-244)||(4820446-4820496)
chr6 (153-205)||(3832582-3832634)
[»] chr7 (5 HSPs)
chr7 (153-242)||(39497201-39497291)
chr7 (219-251)||(1284486-1284518)
chr7 (194-242)||(4292509-4292557)
chr7 (219-251)||(22925251-22925283)
chr7 (215-251)||(44651193-44651229)
[»] chr5 (4 HSPs)
chr5 (153-251)||(6596403-6596501)
chr5 (194-242)||(5168264-5168312)
chr5 (153-206)||(38704097-38704150)
chr5 (215-251)||(35075540-35075576)
[»] chr3 (7 HSPs)
chr3 (193-251)||(32587738-32587796)
chr3 (219-251)||(47742355-47742387)
chr3 (153-206)||(34057853-34057906)
chr3 (194-242)||(5114159-5114207)
chr3 (194-242)||(20547932-20547980)
chr3 (156-251)||(35299777-35299873)
chr3 (194-242)||(41309198-41309246)
[»] chr2 (7 HSPs)
chr2 (198-251)||(8848643-8848696)
chr2 (194-242)||(9990772-9990820)
chr2 (194-242)||(22416294-22416342)
chr2 (153-207)||(33780295-33780349)
chr2 (194-242)||(3838822-3838870)
chr2 (198-242)||(19109039-19109083)
chr2 (198-242)||(19642679-19642723)
[»] chr4 (8 HSPs)
chr4 (194-242)||(10250457-10250505)
chr4 (153-206)||(2999230-2999283)
chr4 (194-243)||(26492087-26492136)
chr4 (196-249)||(32130183-32130236)
chr4 (153-238)||(35897786-35897871)
chr4 (194-242)||(11068769-11068817)
chr4 (215-251)||(38792854-38792890)
chr4 (219-251)||(40693591-40693623)
[»] chr8 (4 HSPs)
chr8 (153-206)||(4658154-4658207)
chr8 (194-251)||(42768276-42768333)
chr8 (194-242)||(10902786-10902834)
chr8 (194-242)||(31249466-31249514)
[»] scaffold0184 (1 HSPs)
scaffold0184 (193-244)||(16729-16781)
[»] scaffold0078 (1 HSPs)
scaffold0078 (193-244)||(56063-56115)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 3559155 - 3558917
Alignment:
Q  13 aatataaacgacaatagcaagccttaatttaacccatgtaaggtctttaaagcatttaaattggaggtccttttcaggtagaggaaaggagtgaaaggtt 112  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3559155 aatataaacgacaatagcaagcctcaatttaacccatgtaagttctttaaagcatttaaattggaggtccttttcaggtagaggaaaggaatgaaaggtt 3559056  T
Q  113 tgaaagaaattgaatgagtcgctttgtttttattgctcgattgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaatgaagc 212  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||     
T  3559055 tgaaagaaattgaatgggtcgctttgtttttattgttcgattgaacaaccatttcaataacaatttatgggacaactataatttataaagaaaatgaagt 3558956  T
Q  213 agtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    ||||||||||||| ||||| |||||||||||| ||||||    
T  3558955 agtggtacaaaaactaaagtaatagagagaaagtaaaaa 3558917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 29359766 - 29359709
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||||||| | | ||| |||||||  ||||||||||||||||| ||||||    
T  29359766 tttacaaagaaaatgatgtaatggcacaaaaaccaaagcaatagagagaaagtaaaaa 29359709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 49065306 - 49065354
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||||| | ||| |||||||  |||||||||||||||    
T  49065306 tttacaaagaaaatgaagtattggcacaaaaaccaaagcaatagagaga 49065354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 20998045 - 20998135
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataa-tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||| ||||||||| ||| |||||| ||||| |||||||||||||||| | | || ||||||||  |||||||||||||||    
T  20998045 ttgaacaaccattttaataacaacgtatgggacaactataaatttacaaagaaaatgaggtattgatacaaaaaccaaagcaatagagaga 20998135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 4820496 - 4820446
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaa 244  Q
    |||||||||||||||| ||| ||  |||||||| |||||||||||||||||    
T  4820496 tttacaaagaaaatgaggcattgacacaaaaatcaaagcaatagagagaaa 4820446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 3832634 - 3832582
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaa 205  Q
    |||||||||||||| | | ||||||||| ||||||  ||||||||||||||||    
T  3832634 ttgaacaaccatttgattgacaacttatgggacaaccataatttacaaagaaa 3832582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 39497201 - 39497291
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatat-aatttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||||| | |||||||| |||||  || ||| |||||||||||||||  | |||||||||||  ||||||||| |||||    
T  39497201 ttgaacaaccatttcaatgataacttataagacaaccattaatgtacaaagaaaatgaaataatggtacaaaaaccaaagcaataaagaga 39497291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 1284518 - 1284486
Alignment:
Q  219 acaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||||||||||||||||| ||||||    
T  1284518 acaaaaattaaagcaatagagagaaagtaaaaa 1284486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 4292557 - 4292509
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||| ||  | |||||||||||| |||||||||||||||    
T  4292557 tttacaaagaaaattaaatattggtacaaaaatcaaagcaatagagaga 4292509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 22925251 - 22925283
Alignment:
Q  219 acaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||||||||| ||||||||||||||    
T  22925251 acaaaaattaaagcaatatagagaaattaaaaa 22925283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 44651193 - 44651229
Alignment:
Q  215 tggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  44651193 tggtacaaaaattaaagtaatagagagaaagtaaaaa 44651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 6596501 - 6596403
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||| ||||||||||| |||| |||| ||| ||  |||||||||||||||||||| | | |   |||||||  ||||||||||||||||| ||||||    
T  6596501 ttgaacgaccatttcaattacaatttatgggataatcataatttacaaagaaaatgaggtattaacacaaaaaccaaagcaatagagagaaagtaaaaa 6596403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 5168312 - 5168264
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||| | ||||| |||||||| |||||||||||||||    
T  5168312 tttacaaagaaaatgaggtagtggcacaaaaatcaaagcaatagagaga 5168264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 38704097 - 38704150
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaa 206  Q
    |||||||||||||| | ||||||||| | ||||||  |||||||||||||||||    
T  38704097 ttgaacaaccatttgattaacaacttttgggacaaccataatttacaaagaaaa 38704150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 35075540 - 35075576
Alignment:
Q  215 tggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  35075540 tggtacaaaaatcaaagcaatagagagaaaataaaaa 35075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 32587738 - 32587796
Alignment:
Q  193 atttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    ||||||||||||||||||  | ||| |||||||  ||||||||||||||||||||||||    
T  32587738 atttacaaagaaaatgaaatattggcacaaaaaccaaagcaatagagagaaattaaaaa 32587796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 47742387 - 47742355
Alignment:
Q  219 acaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||||||||||||||||||||||||    
T  47742387 acaaaaattaaagcaatagagagaaattaaaaa 47742355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 34057853 - 34057906
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaa 206  Q
    |||||||||||||| | | ||||||| |||||||| ||||||||| ||||||||    
T  34057853 ttgaacaaccatttgattgacaacttttaggacaactataatttataaagaaaa 34057906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 5114207 - 5114159
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||| | ||||  |||||||| |||||||||||||||    
T  5114207 tttacaaagaaaatgaggtagtgacacaaaaatcaaagcaatagagaga 5114159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 20547932 - 20547980
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    ||||||||| |||||| | ||||| |||||||| |||||||||||||||    
T  20547932 tttacaaaggaaatgaggtagtggcacaaaaatcaaagcaatagagaga 20547980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 35299777 - 35299873
Alignment:
Q  156 aacaaccatttcaataacaacttataggacaaatat-aatttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    ||||| ||||| ||| |||| || ||||||||  || |||||| ||||||||||| | | ||  |||||||| ||||||||||||||||| ||||||    
T  35299777 aacaagcattttaatgacaatttttaggacaacaatgaatttataaagaaaatgaggtattgacacaaaaatcaaagcaatagagagaaaataaaaa 35299873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 41309246 - 41309198
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||| | ||||  |||||||| |||||||||||||||    
T  41309246 tttacaaagaaaatgaggtagtgacacaaaaatcaaagcaatagagaga 41309198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 8848643 - 8848696
Alignment:
Q  198 caaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||| | | |||||||||||| ||||||||||||||||| ||||||    
T  8848643 caaagaaaatgatgtattggtacaaaaatcaaagcaatagagagaaagtaaaaa 8848696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 9990820 - 9990772
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    ||||||||| |||||||| |||||||||||||  |||||||||||||||    
T  9990820 tttacaaaggaaatgaagtagtggtacaaaaaccaaagcaatagagaga 9990772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 22416342 - 22416294
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||| ||||||| |||||||  |||||||||||||||    
T  22416342 tttacaaagaaaatgaggcagtggcacaaaaaccaaagcaatagagaga 22416294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 33780295 - 33780349
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaat 207  Q
    |||||||||||||| | |||||||||||| |||||  ||| ||||||||||||||    
T  33780295 ttgaacaaccatttgactaacaacttatacgacaaccatagtttacaaagaaaat 33780349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 3838822 - 3838870
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    ||||||||| |||||||||||||  |||||||| ||| |||||||||||    
T  3838822 tttacaaaggaaatgaagcagtgacacaaaaatcaaaacaatagagaga 3838870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 19109039 - 19109083
Alignment:
Q  198 caaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    ||||| |||||||| ||||| |||||||| |||||||||||||||    
T  19109039 caaaggaaatgaagtagtggcacaaaaatcaaagcaatagagaga 19109083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 19642723 - 19642679
Alignment:
Q  198 caaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||| ||  |||||||| |||||||||||||||    
T  19642723 caaagaaaatgaagcattgacacaaaaatcaaagcaatagagaga 19642679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 10250457 - 10250505
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||||| ||||| |||||||  |||||||||||||||    
T  10250457 tttacaaagaaaatgaagtagtggcacaaaaaccaaagcaatagagaga 10250505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 2999283 - 2999230
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaa 206  Q
    |||||||||||||| | | ||||||| ||||||||  |||||||||||||||||    
T  2999283 ttgaacaaccatttaattgacaacttttaggacaaccataatttacaaagaaaa 2999230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 26492136 - 26492087
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaa 243  Q
    ||||||||| |||||||| ||||| |||||||  ||||||||||||||||    
T  26492136 tttacaaaggaaatgaagtagtggcacaaaaaccaaagcaatagagagaa 26492087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 32130183 - 32130236
Alignment:
Q  196 tacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaa 249  Q
    |||||||||||||| | | || |||||||||||||| |||||||||||| ||||    
T  32130183 tacaaagaaaatgatgtattgatacaaaaattaaagaaatagagagaaagtaaa 32130236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 35897871 - 35897786
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaatgaagcagtggtacaaaaattaaagcaataga 238  Q
    ||||||||||||||  || | ||||| | |||||| |||| ||||||| |||||||||| | ||  |||||||| |||||||||||    
T  35897871 ttgaacaaccatttatatgataacttttgggacaactatattttacaatgaaaatgaagtattgacacaaaaatcaaagcaataga 35897786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 11068817 - 11068769
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    ||||||||| |||||| ||||||  |||||||| |||||||||||||||    
T  11068817 tttacaaaggaaatgaggcagtgacacaaaaatcaaagcaatagagaga 11068769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 38792854 - 38792890
Alignment:
Q  215 tggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  38792854 tggtacaaaaatcaaagcaatagagagaaagtaaaaa 38792890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 40693591 - 40693623
Alignment:
Q  219 acaaaaattaaagcaatagagagaaattaaaaa 251  Q
    |||||||||||||||||||||||||| ||||||    
T  40693591 acaaaaattaaagcaatagagagaaagtaaaaa 40693623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 4658154 - 4658207
Alignment:
Q  153 ttgaacaaccatttcaataacaacttataggacaaatataatttacaaagaaaa 206  Q
    |||||||||||||| | | ||||||| ||||||||  |||||||||||||||||    
T  4658154 ttgaacaaccatttaattgacaacttttaggacaaccataatttacaaagaaaa 4658207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 42768333 - 42768276
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagagaaattaaaaa 251  Q
    ||||||||| |||||| ||||||  |||||||  ||||||||||||||||| ||||||    
T  42768333 tttacaaaggaaatgaggcagtgacacaaaaaccaaagcaatagagagaaagtaaaaa 42768276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 10902834 - 10902786
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    |||||||||||||||| | | ||| |||||||| |||||||||||||||    
T  10902834 tttacaaagaaaatgatgtattggcacaaaaatcaaagcaatagagaga 10902786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 31249466 - 31249514
Alignment:
Q  194 tttacaaagaaaatgaagcagtggtacaaaaattaaagcaatagagaga 242  Q
    ||||||||| |||||| | |||||||||||||  |||||||||||||||    
T  31249466 tttacaaaggaaatgaggtagtggtacaaaaaccaaagcaatagagaga 31249514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 16729 - 16781
Alignment:
Q  193 atttacaaagaaaatgaagcagtggtacaaaaattaaagcaat-agagagaaa 244  Q
    ||||||||||||||||| | | ||||||||||| ||||||||| |||||||||    
T  16729 atttacaaagaaaatgaggtattggtacaaaaactaaagcaataagagagaaa 16781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 56115 - 56063
Alignment:
Q  193 atttacaaagaaaatgaagcagtggtacaaaaattaaagcaat-agagagaaa 244  Q
    ||||||||||||||||| | | ||||||||||| ||||||||| |||||||||    
T  56115 atttacaaagaaaatgaggtattggtacaaaaactaaagcaataagagagaaa 56063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University