View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_14 (Length: 218)
Name: NF19636_low_14
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 18491497 - 18491311
Alignment:
| Q |
18 |
ttcttgagaagcatgttaagagaaatggtgaagaaaaatatacatgtagaacatcagagattgaagctgataaattaaaggaccatattgaaagtgacca |
117 |
Q |
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| T |
18491497 |
ttcttgagaagcatgttaagagaaatggtgaagaaaaatatacatgtagaacatcagagattgaagctgataaattaaaggaccatattgaaagtgacca |
18491398 |
T |
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| Q |
118 |
atgtattaagtcttgtggtttggacagaaaatcctttggaatatcatctgattctcttcttgaatctagtttcacaaaaaacctttg |
204 |
Q |
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| T |
18491397 |
atgtattaagtcttgtggtttggacagaaaatcctttggaatatcatctgattctcttcttgaatctagtttcacaaaaaacctttg |
18491311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 45450844 - 45450975
Alignment:
| Q |
67 |
aacatcagagattgaagctgataaattaaaggaccatattgaaagtgaccaatgtattaagtcttgtggtttggacagaaaatcctttggaatatcatct |
166 |
Q |
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| T |
45450844 |
aacattagagattgaagctgataaactaaaggatcacatcgaaagcgaccaatgcatcaaagcttgtgatttagacagaaaatcacttggaatttcatca |
45450943 |
T |
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| Q |
167 |
gattctcttcttgaatctagtttcacaaaaaa |
198 |
Q |
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| T |
45450944 |
gattctcttctcgagtctagctttacaaaaaa |
45450975 |
T |
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