View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_15 (Length: 216)
Name: NF19636_low_15
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_15 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 30947898 - 30948090
Alignment:
| Q |
24 |
gtattagtttattaatcatgtataatacaatccaattataacgtcgtgtaatgcagaactggtgttcctttataagctgatattttgaggcatttaattt |
123 |
Q |
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| T |
30947898 |
gtattagtttattaatcatgtataatacaatccaattataactttgtgtaatgcagaactggtgttcctttataagctgatattttgagtcatttaattt |
30947997 |
T |
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| Q |
124 |
aatgttgttttctatagatcgctgagtattttgtttatttctgttccttgttcggatgcaattgttggtagttttaccttgagtatcacaatg |
216 |
Q |
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| T |
30947998 |
aatgttgttttctatagatcgctgaatattttgtttatttctgttccttgttcggatgcaattgttggtagttttaccttgagtatcacaatg |
30948090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 6910563 - 6910432
Alignment:
| Q |
43 |
gtataatacaatccaattataacgtcgtgtaatgcagaactggtgttcctttataagctgatattttgaggcatttaatttaatgttgttttctatagat |
142 |
Q |
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| T |
6910563 |
gtataatataattcaattataacgtcatgtaatgtagaactggtgttcctttgtaaactgatattttgaggca-------taaggttgttttatatagat |
6910471 |
T |
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| Q |
143 |
cgctgagtattttgtttatttctgttccttgttcggatg |
181 |
Q |
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| T |
6910470 |
cgttgaatattttgtttatttatgttactcgttaggatg |
6910432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 40088903 - 40088864
Alignment:
| Q |
177 |
ggatgcaattgttggtagttttaccttgagtatcacaatg |
216 |
Q |
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| T |
40088903 |
ggatgcaattgttggtagtcttaccttgagtatcataatg |
40088864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 25467975 - 25467934
Alignment:
| Q |
160 |
atttctgttccttgttcggatgcaattgttggtagttttacc |
201 |
Q |
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| T |
25467975 |
atttctgttcgtggttgggatgcaattgttggtagttttacc |
25467934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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