View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_16 (Length: 211)
Name: NF19636_low_16
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 11162962 - 11162788
Alignment:
| Q |
18 |
atgcatcaaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgat |
117 |
Q |
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| T |
11162962 |
atgcatcaaaaacgaagttgcagcggctgattcggctgtgactcaaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgat |
11162863 |
T |
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| Q |
118 |
tttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttgattcaagcaacaaagacgaagtt |
192 |
Q |
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| T |
11162862 |
tttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttaattcaagcaacaaagacgaagtt |
11162788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 11162779 - 11162657
Alignment:
| Q |
45 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
144 |
Q |
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| T |
11162779 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11162680 |
T |
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| Q |
145 |
gctacaaaagagccaaagctggt |
167 |
Q |
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| T |
11162679 |
gttacaaaagagcctaagctggt |
11162657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 11201554 - 11201432
Alignment:
| Q |
45 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
144 |
Q |
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| T |
11201554 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11201455 |
T |
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| Q |
145 |
gctacaaaagagccaaagctggt |
167 |
Q |
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| T |
11201454 |
gttacaaaagagcctaagctggt |
11201432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 4802772 - 4802699
Alignment:
| Q |
24 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgata |
97 |
Q |
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| T |
4802772 |
caaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 4802840 - 4802780
Alignment:
| Q |
24 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaag |
84 |
Q |
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| T |
4802840 |
caaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaag |
4802780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 4802856 - 4802824
Alignment:
| Q |
164 |
tggttgattcaagcaacaaagacgaagttgctg |
196 |
Q |
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| T |
4802856 |
tggttgattcaagcaacaaagacgaagttgctg |
4802824 |
T |
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