View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19636_low_3 (Length: 461)

Name: NF19636_low_3
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19636_low_3
NF19636_low_3
[»] chr7 (7 HSPs)
chr7 (16-279)||(1914681-1914949)
chr7 (297-461)||(1914474-1914638)
chr7 (396-458)||(8094368-8094430)
chr7 (412-454)||(17944304-17944346)
chr7 (432-461)||(9038170-9038199)
chr7 (396-461)||(36598302-36598367)
chr7 (396-456)||(21073201-21073261)
[»] chr6 (2 HSPs)
chr6 (412-458)||(33089568-33089614)
chr6 (404-457)||(34538172-34538225)
[»] chr1 (1 HSPs)
chr1 (396-461)||(10199354-10199419)
[»] chr4 (1 HSPs)
chr4 (404-460)||(36577496-36577552)
[»] chr2 (3 HSPs)
chr2 (412-455)||(41293124-41293167)
chr2 (396-461)||(4350749-4350814)
chr2 (432-461)||(43827935-43827964)
[»] chr8 (1 HSPs)
chr8 (396-461)||(16162819-16162884)
[»] chr5 (1 HSPs)
chr5 (412-461)||(39248158-39248207)
[»] chr3 (2 HSPs)
chr3 (396-461)||(44014744-44014809)
chr3 (397-461)||(49465612-49465676)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 1914949 - 1914681
Alignment:
Q  16 atgttgtaagtaaattcatcaacaaaaacctgtttggattggattatttaaacttatctacaagccaccagcggagagagtcaaaattttacaagggagt 115  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||    
T  1914949 atgttgcaagtagattcatcaacaaaaacctgtttggattggattatttaaacttatctacaagccaccggaggagagagtcaaaattttacaagggtgt 1914850  T
Q  116 aaaatattaa-----ataaaaaatatttatgaatcttgacttggcaaatttcgtttttgacaaagttcaccgcatagttactatagagaatcaaattgtc 210  Q
    || |||| ||     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1914849 aacatataaagaaaaataaaaaatatttatgaatcttgacttgacaaatttcgtttttgacaaagttcaccgcatagttactatagagaatcaaattgtc 1914750  T
Q  211 aaaataagatgaataaattcatctatcggtgatgattttttgtctttcctatttctattaattttttag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1914749 aaaataagatgaataaattcatctatcggtgatgattttttgtctttcctatttctattaattttttag 1914681  T

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Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 297 - 461
Target Start/End: Complemental strand, 1914638 - 1914474
Alignment:
Q  297 gtagctaaatacttaagaacactaaccaataaaaatatttaaaaataaataagcggggcagccaaggccaccccaaagaaacagtacaatatactcctgc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1914638 gtagctaaatacttaagaacactaaccaataaaaatatttaaaaataaataagcggggcagccaaggccaccccaaagaaacaatacaatatactcctgc 1914539  T
Q  397 tactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1914538 tactaacgtaagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 1914474  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 8094430 - 8094368
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgtt 458  Q
    |||||| |||||||| |||||||||||||| ||||   |||| ||||||||||||||||||||    
T  8094430 ctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgtt 8094368  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 17944304 - 17944346
Alignment:
Q  412 ttgtgagactatttcagagcacttataaaaacagcttatgaca 454  Q
    |||||||||| |||||||  |||||||||||||||||||||||    
T  17944304 ttgtgagactgtttcagacaacttataaaaacagcttatgaca 17944346  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 9038199 - 9038170
Alignment:
Q  432 acttataaaaacagcttatgacatgttcat 461  Q
    ||||||||||||||||||||||||||||||    
T  9038199 acttataaaaacagcttatgacatgttcat 9038170  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 36598302 - 36598367
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    ||||| |||||||||||||||||| | ||| ||||  |||||  ||||| ||||||||||||||||    
T  36598302 ctactgacataagcaattgtgagattgtttgagagagcttatggaaacatcttatgacatgttcat 36598367  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 21073261 - 21073201
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatg 456  Q
    ||||| |||||||||||||||||||||||||  ||||| ||| |||| ||  |||||||||    
T  21073261 ctactgacataagcaattgtgagactatttcgaagcacctatgaaaatagtctatgacatg 21073201  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 33089614 - 33089568
Alignment:
Q  412 ttgtgagactatttcagagcacttataaaaacagcttatgacatgtt 458  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  33089614 ttgtgagactatttcagagaacttatgaaaacagcttaggacatgtt 33089568  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 457
Target Start/End: Original strand, 34538172 - 34538225
Alignment:
Q  404 ataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgt 457  Q
    ||||||| |||||||||||||| ||||  ||||||||||||||||| |||||||    
T  34538172 ataagcacttgtgagactatttgagagatcttataaaaacagcttacgacatgt 34538225  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 10199354 - 10199419
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    ||||||||||||||| |||||| |||||||  ||| ||| || |||| ||||||||||||||||||    
T  10199354 ctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcat 10199419  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 36577496 - 36577552
Alignment:
Q  404 ataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttca 460  Q
    ||||||| |||||||||| |||| ||| ||||| ||||||| |||||||||||||||    
T  36577496 ataagcacttgtgagactgtttcggagaacttacaaaaacaacttatgacatgttca 36577552  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Original strand, 41293124 - 41293167
Alignment:
Q  412 ttgtgagactatttcagagcacttataaaaacagcttatgacat 455  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||    
T  41293124 ttgtgagactatttgggagaacttataaaaacagcttatgacat 41293167  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 4350814 - 4350749
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    ||||| ||||||||| ||  |||| | ||| |||| |||||| |||||||||||||||||||||||    
T  4350814 ctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatgacatgttcat 4350749  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Original strand, 43827935 - 43827964
Alignment:
Q  432 acttataaaaacagcttatgacatgttcat 461  Q
    ||||||||||||||||||||||||||||||    
T  43827935 acttataaaaacagcttatgacatgttcat 43827964  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 16162884 - 16162819
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    |||||| ||||| || |||||||||| ||| |||  |||||| ||||||||||||||| |||||||    
T  16162884 ctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcat 16162819  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 39248207 - 39248158
Alignment:
Q  412 ttgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    |||||||||| |||  ||| |||||||||||||||||||||| |||||||    
T  39248207 ttgtgagactgtttgggagaacttataaaaacagcttatgacttgttcat 39248158  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 44014744 - 44014809
Alignment:
Q  396 ctactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    |||||| ||||| || |||||||||| ||| |||  |||||| ||||||||||||||| |||||||    
T  44014744 ctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgacctgttcat 44014809  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 49465612 - 49465676
Alignment:
Q  397 tactaacataagcaattgtgagactatttcagagcacttataaaaacagcttatgacatgttcat 461  Q
    ||||| |||||||| |||||| | | |||| ||| |||||| |||||||||||| ||||||||||    
T  49465612 tactaccataagcacttgtgatattgtttcggagaacttatgaaaacagcttattacatgttcat 49465676  T

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