View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_4 (Length: 450)
Name: NF19636_low_4
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 233 - 433
Target Start/End: Complemental strand, 1431943 - 1431743
Alignment:
| Q |
233 |
ttcaataaggtttttccaataatcgatggtttcaatatgagggtatgatcaacatgcataaattgatcatcgtagtagtacatatgtaatcagaatcgat |
332 |
Q |
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| T |
1431943 |
ttcaataaggtttttccaataatcgatggtttcaatatgagggtatgatcaacatgcataaattgatcatcgtagtagtacatatgtaatcagaatcgat |
1431844 |
T |
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| Q |
333 |
tctaacgcaattgattaaaggattgcagaaagagatattnnnnnnnctcgatagcttgatgagaagaaagaaactcgattgtggcggcgactaccttgag |
432 |
Q |
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| T |
1431843 |
tctaacgcaattgattaaaggattgcagaaagagatattaaaaaaactcgatagcttgatgagaagaaagaaactcgattgtggcggcgagtaccttgag |
1431744 |
T |
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| Q |
433 |
a |
433 |
Q |
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| T |
1431743 |
a |
1431743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1432186 - 1432109
Alignment:
| Q |
1 |
acagccacaaaaaagatgatgatgcaaacaacaaaaagcaacacatatatgatcatataaatacaatgatcacatcag |
78 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1432186 |
acagccacaaaaaacatgatgatgcaaacaacaaaaagcaacacatatatgatcatataaatacaatgatcacatcag |
1432109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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