View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_5 (Length: 405)
Name: NF19636_low_5
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 47180015 - 47180289
Alignment:
| Q |
11 |
catagggtagtcaattcagccagcaaaagatgaaaagaaactgtgatgacttcagtcattcaccctgaaaacctcatctctgtgagcttacctagcttct |
110 |
Q |
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| T |
47180015 |
catagggtagtcaattcagccagcaaaagatgaaaagaaactgtgatgacttcagtcattcaccctgaaaacctcatctctgtgagcttacctagcttct |
47180114 |
T |
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| Q |
111 |
atttctcctnnnnnnnntattcaaaaaacgccaaatttattcttctaggttctagctatttggttcccttaaaacttgatgagatgcattgaatcattga |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47180115 |
atttctcctaaaaaaa-tattcaaaaaacgccaaatttattcttctaggttctagctatttggttcccttaaaacttgatgagatgcattgaatcattga |
47180213 |
T |
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| Q |
211 |
gcattttattgtatttatttgtatcaatgatcaaaggcaaacctctcgtcatccctactactattgcatatagcca |
286 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47180214 |
gcattttattgtatttatttgtatcaatgatcaaaagcaaacctctcgtcatccctactactattgcatatagcca |
47180289 |
T |
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