View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_7 (Length: 374)
Name: NF19636_low_7
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 62 - 357
Target Start/End: Complemental strand, 28571925 - 28571630
Alignment:
| Q |
62 |
gctaaaccagccgcaaaagacattctgttgggcaccaacaccattcatagtacatgcacgtaggcatagggattctctccaaagaccaacgccacggcaa |
161 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28571925 |
gctaaaccagccgcaaaagacattccgttgagcaccaacaccattcatagtacatgcacgtaggcatagggattctctacaaagaccaacgccacggcaa |
28571826 |
T |
|
| Q |
162 |
aatcttgatgtcatgcacaatttcgttcacatccgggttctgggtattaaacactttattgttcctcgcaatccacaacacccatatcgttgcatgccaa |
261 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28571825 |
aatcttgatgtcatgcacaatttcgtccacatccgggttccgggtattaaacactttattgttcctcgcaatccacaacacccacatcgttgcatgccaa |
28571726 |
T |
|
| Q |
262 |
atgagtcttaggcccttacgaattttcttattccgcacaccctaacccaacactcccaatgcacaaataaattaggcggaattaagagaatcctct |
357 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28571725 |
atgagtcttaggcccttacaaattttcttattccgcacaccctaacccaacactcccaatgcacaaataaattaggcggaattaagagaatcctct |
28571630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 64 - 357
Target Start/End: Complemental strand, 24189696 - 24189414
Alignment:
| Q |
64 |
taaaccagccgcaaaagacattctgttgggcaccaacaccattcatagtacatgcacgtaggcatagggattctctccaaagaccaacgccacggcaaaa |
163 |
Q |
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|||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||| |||||| ||||||||||| ||||||| ||| | |
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| T |
24189696 |
taaaccagacgcaaaagacattcccttgggcaccagcaccattcatagtacatacacggaggcatagagattctatccaaagaccatcgccacgacaaga |
24189597 |
T |
|
| Q |
164 |
tcttgatgtcatgcacaatttcgttcacatccgggttctgggtattaaacactttattgttcctcgcaatccacaacacccatatcgttgcatgccaaat |
263 |
Q |
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||||||||||| |||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||| |
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| T |
24189596 |
ccttgatgtcatccaca------------tccgggttctggctattaaacactctattattcctcgcaatccacaacacccacaccgttgcatgccaaat |
24189509 |
T |
|
| Q |
264 |
gagtcttaggcccttacgaattttcttattccgcacacc-ctaacccaacactcccaatgcacaaataaattaggcggaattaagagaatcctct |
357 |
Q |
| |
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||||||||||||||||||||| |||||||| || | || | | ||||||||||||| | | || || |||||| |||||||||||||||||| |
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| T |
24189508 |
aagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaaagagcgaacaagttaggcagaattaagagaatcctct |
24189414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 11780187 - 11779983
Alignment:
| Q |
64 |
taaaccagccgcaaaagacattctgttgggcaccaacaccattcatagtacatgcacgtaggcatagggattctctccaaagaccaacgccacggcaaaa |
163 |
Q |
| |
|
||||| |||||||| ||||| | |||||| |||| |||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| | ||| |
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| T |
11780187 |
taaactagccgcaatagacaatactttgggctccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaa |
11780088 |
T |
|
| Q |
164 |
tcttgatgtcatgcacaatttcgttcacatccgggttctgggtattaaacactttattgttcctcgcaatccacaacacccatatcgttgcatgccaaat |
263 |
Q |
| |
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||| || || | ||||||||| | ||||||||| ||| || |||||| ||| ||| ||||| || |||||||| |||| | |||||| |||||||| |
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| T |
11780087 |
ccttaatctcctccacaatttcttccacatccggattccggccattaaaaactctatcattccttgccttccacaacccccacaccgttgcgtgccaaat |
11779988 |
T |
|
| Q |
264 |
gagtc |
268 |
Q |
| |
|
|||| |
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|
| T |
11779987 |
aagtc |
11779983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 19472008 - 19471968
Alignment:
| Q |
308 |
ccaacactcccaatgcacaaataaattaggcggaattaaga |
348 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||| |
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| T |
19472008 |
ccaacactcccaatgcacaaagaaattagatggaattaaga |
19471968 |
T |
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