View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_8 (Length: 359)
Name: NF19636_low_8
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 21181049 - 21180697
Alignment:
| Q |
6 |
agttagaacaactttagagtagtgtcaaagacatccaatttagttttatctccttcttgtctaagtcaaagtcattaacaaaattcaattgcttatttgc |
105 |
Q |
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| T |
21181049 |
agttagaacaactttagagtagtgtcaaagacatccaatttagttttatctccttcttgtctaagtcaaagtcattaacaaaattcaattgcttatttgc |
21180950 |
T |
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| Q |
106 |
tatgattgattaagctgctagctagttatcatttgttgtttgttttatataatgttgtgtattcaagaatgcttctaataggaattgatgtaactctttc |
205 |
Q |
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| T |
21180949 |
tatgattgattaagctgctagctagttatcatttgttgtttgttttatataatgttgtgtattcaagaatgcatctaataggaattgatgtaactctttc |
21180850 |
T |
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| Q |
206 |
aaccaatgttcttgttgccaaagtaagagagttctatctaatgtgtatgtgtcacttcagaga--tatagatattggtgtcattttaatgttactattac |
303 |
Q |
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| T |
21180849 |
aaccaatgttcttgttgccaaagtaagagagttctatctaatgtgtatgtgtcacttcagagatatatagatattggtgtcattttaatgttactattac |
21180750 |
T |
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| Q |
304 |
tattaagtggatagtttgcatgaaatgtatatcccaaattcaattgaagcaat |
356 |
Q |
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| T |
21180749 |
tattaagtggatagtttgcatggaatgtatagcccagattcaattgaagcaat |
21180697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 21197123 - 21197078
Alignment:
| Q |
7 |
gttagaacaactttagagtagtgtcaaagacatccaatttagtttt |
52 |
Q |
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| T |
21197123 |
gttagaacaactttagagtggtgtcaaagacattcaattttgtttt |
21197078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 21850959 - 21850891
Alignment:
| Q |
6 |
agttagaacaactttagagtagtgtcaaagacatccaatttagttttatctccttcttgtctaagtcaaa |
75 |
Q |
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|||| ||||||||||||||| ||||||||||||||| |||| | |||||| ||||||||| |||||||| |
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| T |
21850959 |
agttggaacaactttagagtggtgtcaaagacatcctattttg-tttatcaccttcttgtgcaagtcaaa |
21850891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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