View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19636_low_9 (Length: 348)
Name: NF19636_low_9
Description: NF19636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19636_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 3558865 - 3558688
Alignment:
| Q |
9 |
ttgtacaaatatcatttcta---aagaagaaaataaattgactgcatacgcatatgtacatttttaaatttcatccgtatcgttaatgttgatccacgac |
105 |
Q |
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| T |
3558865 |
ttgtataaatatcatttctattaaagaagaaaataatttgactgcatacgcataggtacatttttaaattttatccgtatcgttaatgttgatccacgac |
3558766 |
T |
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| Q |
106 |
ctataattttaattctctcatctctcacaataaaaaagaataaattataagaatgattaaattacaccgatgtattgt |
183 |
Q |
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| T |
3558765 |
ctataattttaattctctcatctctcacaataaaaaagaataaattataagaatgattaaattacaccgatgtattgt |
3558688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 3558704 - 3558569
Alignment:
| Q |
198 |
ttacaccgatgtattgttacatcaatgctaaccgttggattgtaaatttatatcagaaaggttactcatgtaaatttttagataaatctataatcacgag |
297 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
3558704 |
ttacaccgatgtattgttacatcaatgctaacttttggattgtaagtttatatcagaaagattattcatgtaaatttttagataaatctatactcacgag |
3558605 |
T |
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| Q |
298 |
ccaatttggttttgtttatatccacaatttcctttt |
333 |
Q |
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| T |
3558604 |
ccaatttggttttgtttatatccacattttcctttt |
3558569 |
T |
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