View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19637_high_2 (Length: 375)
Name: NF19637_high_2
Description: NF19637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19637_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 36027258 - 36026915
Alignment:
| Q |
13 |
aatataacgtacacaatcacttaaatatcaactaatattaaagatgtatgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatt |
112 |
Q |
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| T |
36027258 |
aatataacgtacacaatcacttaaatatcaactaatattaaagatgtatgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatt |
36027159 |
T |
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| Q |
113 |
tgataatatggcttgatatagctggctacataaaccagcatcaaatcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattc |
212 |
Q |
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| T |
36027158 |
tgataatatggcttgatatagctggctacataaaccagtatcaaatcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattc |
36027059 |
T |
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| Q |
213 |
aggaagaaaagagaaccagtattcaaaccacaccaatttccttgcatgcattagataatgaaaatattaaccaaaaagggggtgaaatcaacaagatttt |
312 |
Q |
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| T |
36027058 |
aggaagaaaagagaaccagtattcaaaccacaccaatttccttgcatgcattagataattaaaatattaaccaaaaagggggtgaaatcaacaagatttt |
36026959 |
T |
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| Q |
313 |
gaaatgttaagagatcaactttgtaaagaaattcataccacacc |
356 |
Q |
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| T |
36026958 |
gaaatgttaagagatcaactttgtaaagaaattcataccacacc |
36026915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 157 - 353
Target Start/End: Original strand, 16932767 - 16932963
Alignment:
| Q |
157 |
atcattacacactgctaaaccagcaaaggatgcatcttctgaatgcaacttgattcaggaagaaaagagaaccagtattcaaaccacaccaatttccttg |
256 |
Q |
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| T |
16932767 |
atcatgacacactgctaaaccagcaaagtatgaatcttctgaatgcaacttgattcaggaagaaaagagaaccagtactcaaaccaccccaacttccttg |
16932866 |
T |
|
| Q |
257 |
catgcattagataatgaaaatattaaccaaaaagggggtgaaatcaacaagattttgaaatgttaagagatcaactttgtaaagaaattcataccac |
353 |
Q |
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| T |
16932867 |
catgcattagataatgaaaatattaaccaaaaagggggtgaaatcaataagatcttcaaatgttaagagatcaactttgtaaagaaattcataccac |
16932963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 16932599 - 16932726
Alignment:
| Q |
32 |
cttaaatatcaactaatattaaagatgta-tgtatcaaattgcaaaaagaaagatcccacaagagatccagctcgatatatttgataatatggcttgata |
130 |
Q |
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| T |
16932599 |
cttaaatatcaactaatattaaaaatgtaatgtatgaaattgcgaaaagaaagattccacaagagatccaactcgatatatttgataatattgcttgata |
16932698 |
T |
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| Q |
131 |
tagctggctacataaaccagcatcaaat |
158 |
Q |
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| T |
16932699 |
tagctggccacataaaccagtatcaaat |
16932726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 16936466 - 16936521
Alignment:
| Q |
237 |
aaaccacaccaatttccttgcatgcattagataatgaaaatattaaccaaaaagggg |
293 |
Q |
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| T |
16936466 |
aaaccacaccaacttcatt-catgcattagattatgaaaatattagcccaaaagggg |
16936521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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