View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19637_low_2 (Length: 462)
Name: NF19637_low_2
Description: NF19637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19637_low_2 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 11849533 - 11849980
Alignment:
| Q |
7 |
cagaaatgaagcaagttagatgataagagcaagaaatgtgttttgctgggagtaagtgacgaatcaaaggcctacaaactatatgatccagtttccaaga |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849533 |
cagaaaagaagcaagttagatgataagagcaagaaatgtgttttgctgggagtaagtgacgaatcaaaggcctacaaactatatgatccagtttccaaga |
11849632 |
T |
|
| Q |
107 |
aagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaaagatgaatgtaggccagatcttttagagtggaaaaa |
206 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11849633 |
aagtaatcattagtaaggatgtgatttttgaagaagatgtatgttggaactggaacaaccaaaaagatgaatgcaggccagatcttttagagtggaaaaa |
11849732 |
T |
|
| Q |
207 |
tgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagcaatgataataacaataacaatgatgaatctaattca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849733 |
tgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagcaatgataataacaataacaatgatgaatctaattca |
11849832 |
T |
|
| Q |
307 |
tcgtctagtgaatctcattaggatgactcacccaatgtcgttgaagggagggtaagaaaaacaccttcatggatggcagattatgaaactggtgaaggct |
406 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849833 |
tcgtctagtgaatctcatgaggatgactcacccaatgtcgttgaagggagggtaagaaaaacaccttcatggatggcagattatgaaactggtgaaggct |
11849932 |
T |
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| Q |
407 |
tatctgatgaagataatttgaatgcaatgatgatggttgctgatgatg |
454 |
Q |
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| T |
11849933 |
tatctgatgaagataatttgaatgcaatgatgatggttgctgaagatg |
11849980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 5876207 - 5876640
Alignment:
| Q |
7 |
cagaaatgaagcaagttagatgataagagcaagaaatgtgttttgctgggagtaagtgacgaatcaaaggcctacaaactatatgatccagtttccaaga |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876207 |
cagaaaagaagcaagttagatgataagagcaagaaatgtgttttgctgggagtaagtgacgaatcaaaggcctacaaactatatgatccagtttccaaga |
5876306 |
T |
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| Q |
107 |
aagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaaagatgaatgtaggccagatcttttagagtggaaaaa |
206 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
5876307 |
aagtaatcattagtaaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaaagatgaatgcaggc--------------tggaaaaa |
5876392 |
T |
|
| Q |
207 |
tgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagcaatgataataacaataacaatgatgaatctaattca |
306 |
Q |
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| T |
5876393 |
tgattatgagattgacattgaaggagtagagggaaatgaagaaggaggcaacaatgatgctagcaatgataataacaataacaatgatgaatctaattca |
5876492 |
T |
|
| Q |
307 |
tcgtctagtgaatctcattaggatgactcacccaatgtcgttgaagggagggtaagaaaaacaccttcatggatggcagattatgaaactggtgaaggct |
406 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
5876493 |
tcgtctagtgaatctcatgaggatgactcacccaatgtcgttgaagggagggtaagaaaaaaaccttcatggatggcatattatgaaactggtgaaggct |
5876592 |
T |
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| Q |
407 |
tatctgatgaagataatttgaatgcaatgatgatggttgctgatgatg |
454 |
Q |
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| T |
5876593 |
tatctgatgaagataatttgaatgcaatgatgatggttgctgaagatg |
5876640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 26554106 - 26554328
Alignment:
| Q |
7 |
cagaaatgaagcaagttagatgataagagcaagaaatgtgttttgctgggagtaagtgacgaatcaaaggcctacaaactatatgatccagtttccaaga |
106 |
Q |
| |
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|||||| |||| ||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |
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| T |
26554106 |
cagaaaagaagtaagctagatgacaagagcaagaaatgtgttttgttgggagtaagtgatgaatcaaaggcctacaggttatatgatccaatttccaaga |
26554205 |
T |
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| Q |
107 |
aagtaatcattaataaggatgtgatttttgaagaagatgtatgttggaactgggacaaccaaaaagatgaatgtaggccagatcttttagagtggaaaaa |
206 |
Q |
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|| ||||||||| || |||||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||| | ||| ||||||||| ||||| |
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| T |
26554206 |
aaataatcattagcaaagatgtgatttttgaagaagatgaatgctggaattgggacagaagcaaagaggaatgtagtctggatgttttagagttcaaaaa |
26554305 |
T |
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| Q |
207 |
tgattatgagattgacattgaag |
229 |
Q |
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||||| |||| ||||||||||| |
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| T |
26554306 |
tgattccgagaatgacattgaag |
26554328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 26554438 - 26554527
Alignment:
| Q |
348 |
tgaagggagggtaagaaaaacaccttcatggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgat |
437 |
Q |
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| T |
26554438 |
tgaagggagggtaagaagaccaccgtgttggatggaagactatgaaacaggtgaaggtttgtcagatgaagatggtatgaatgcaatgat |
26554527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 1681 - 1606
Alignment:
| Q |
374 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
449 |
Q |
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|||||||| ||||||||||||| || ||||| | |||||||| || ||| |||| ||||||||||||||| |||| |
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| T |
1681 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
1606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 7125 - 7050
Alignment:
| Q |
374 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
449 |
Q |
| |
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|||||||| ||||||||||||| || ||||| | |||||||| || ||| |||| ||||||||||||||| |||| |
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| T |
7125 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
7050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 449
Target Start/End: Original strand, 14246301 - 14246376
Alignment:
| Q |
374 |
catggatggcagattatgaaactggtgaaggcttatctgatgaagataatttgaatgcaatgatgatggttgctga |
449 |
Q |
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| T |
14246301 |
catggatgacagattatgaaacaggggaaggtctctctgatgatgaaaatctgaacgcaatgatgatggttactga |
14246376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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