View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19637_low_5 (Length: 239)
Name: NF19637_low_5
Description: NF19637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19637_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 36027267 - 36027449
Alignment:
| Q |
1 |
tgattgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctactc |
100 |
Q |
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| T |
36027267 |
tgattgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatcttaccctaccc |
36027366 |
T |
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| Q |
101 |
agatgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
183 |
Q |
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| T |
36027367 |
agatgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaacagtc |
36027449 |
T |
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Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 16931977 - 16931801
Alignment:
| Q |
1 |
tgattgctggtaatgtggtgtggtgattttagttggtaaaagatatatctctgcacctctcatgaccagcgatattagtgcgtccaatctta-ccctact |
99 |
Q |
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|||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16931977 |
tgattgctggtaatgtggtgtgatgattttagttgtttaaagatat--ctctgcacctctcatgaccagcgatattagtgcgtccaatcttacccctacc |
16931880 |
T |
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| Q |
100 |
cagatgatatctcttatttatcatatcatccctgtctaatttcagcaatgagtttgataaatatattattgtttgaaaac |
179 |
Q |
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| |||||| |||| || |||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||||||| |
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| T |
16931879 |
ccgatgatttctcataattatcatatcatccctgtctaa-ttcaacgatgagtttgataaatataatattgtttgaaaac |
16931801 |
T |
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