View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19638_high_12 (Length: 284)
Name: NF19638_high_12
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 110 - 273
Target Start/End: Complemental strand, 33266393 - 33266229
Alignment:
| Q |
110 |
aaaattacaaaatcaatttgtggtcacacttcatctgaatagagggcggaaaaaagtgacaatgaaaaacgataaatttggtattagtttggccataatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33266393 |
aaaattacaaaatcaatttgtggtcacacttcatctgaatagagggcggaaaaaagtgacaatgaaaaacgataaatttggtattagtttggccataatt |
33266294 |
T |
|
| Q |
210 |
tattttagaagacataatatttcgttatacatggact-atttgatgagataaataattctatata |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
33266293 |
tattttagaagacataatatttcgttatacatggactgatgtgatgagataaataattctatata |
33266229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 110 - 273
Target Start/End: Complemental strand, 33275537 - 33275373
Alignment:
| Q |
110 |
aaaattacaaaatcaatttgtggtcacacttcatctgaatagagggcggaaaaaagtgacaatgaaaaacgataaatttggtattagtttggccataatt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33275537 |
aaaattacaaaatcaatttgtggtcacacttcatctgaatagaggacggaaaaaagtgacaatgaaaaacgataaatttggtattagtttggccataatt |
33275438 |
T |
|
| Q |
210 |
tattttagaagacataatatttcgttatacatggact-atttgatgagataaataattctatata |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33275437 |
tattttagaagacataatatttcgttatacatggactgatttgatgagataaataattctatata |
33275373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 33061486 - 33061355
Alignment:
| Q |
110 |
aaaattacaaaatcaatttgtggtcacacttcatctgaatagagggcggaaaaaagtgacaatgaaaaacgataaatttggta-ttagtttggccataat |
208 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
33061486 |
aaaattacaaaattaatttgtggtcagacttcatctgaatagagggcagataaaagtgacaacccaaaacgatagatttggtacttagtttggccataat |
33061387 |
T |
|
| Q |
209 |
ttat----tttagaagacataatatttcgtta |
236 |
Q |
| |
|
||| ||||||||||||||||||| |||| |
|
|
| T |
33061386 |
atatattatttagaagacataatattttgtta |
33061355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 33362073 - 33362007
Alignment:
| Q |
208 |
tttattttagaagacataatatttcgttatacatggact-atttgatgagataaataattctatata |
273 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
33362073 |
tttagtttagaagacataatatttcgttatgcatggactgatttgataagataaataattctatata |
33362007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University