View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19638_high_13 (Length: 250)

Name: NF19638_high_13
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19638_high_13
NF19638_high_13
[»] chr5 (3 HSPs)
chr5 (164-250)||(40389361-40389447)
chr5 (17-85)||(7413870-7413938)
chr5 (19-84)||(5075263-5075328)
[»] chr3 (1 HSPs)
chr3 (17-86)||(7400888-7400957)
[»] chr8 (1 HSPs)
chr8 (17-84)||(25641796-25641863)
[»] chr2 (4 HSPs)
chr2 (17-84)||(31331325-31331392)
chr2 (17-84)||(31338046-31338113)
chr2 (17-86)||(30269900-30269969)
chr2 (30-84)||(44924226-44924280)
[»] chr7 (2 HSPs)
chr7 (17-84)||(4682325-4682392)
chr7 (20-59)||(26205119-26205158)
[»] chr4 (2 HSPs)
chr4 (17-84)||(53303293-53303361)
chr4 (17-68)||(8239063-8239114)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 40389447 - 40389361
Alignment:
Q  164 gataagatgacagcagttgaagagacggagtgtcgaacgaccactatattcttcttttgttgaatgaatgaaggttcttgattttgc 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40389447 gataagatgacagcagttgaagagacggagtgtcgaacgaccactatattcttcttttgttgaatgaatgaaggttcttgattttgc 40389361  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 7413870 - 7413938
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtga 85  Q
    ||||||||| |||| ||||| ||| ||||| ||||||||||||||| ||||||| | ||||||||||||    
T  7413870 tctatattaataaccattaagtaagtgttgtaaggtgaatgttactaaaacacataagtgtagtagtga 7413938  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 5075328 - 5075263
Alignment:
Q  19 tatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    |||||| ||||| ||||| ||| ||||||||||||||||||| | ||||||| | ||||| |||||    
T  5075328 tatattggtaaccattaagtaagtgttgcaaggtgaatgttattaaaacacataagtgtaatagtg 5075263  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 7400957 - 7400888
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtgaa 86  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  7400957 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtgaa 7400888  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 25641796 - 25641863
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  25641796 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 25641863  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 31331392 - 31331325
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  31331392 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 31331325  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 31338113 - 31338046
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  31338113 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 31338046  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 30269900 - 30269969
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtgaa 86  Q
    ||||||||||||||||||||| || ||||||||  ||||||||||| ||||||| |||||||||||||||    
T  30269900 tctatattagtaactattaaacaagtgttgcaatatgaatgttactaaaacacatatgtgtagtagtgaa 30269969  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 44924226 - 44924280
Alignment:
Q  30 ctattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    |||||||| || ||||||||| ||||||||||| ||||||| |||||||||||||    
T  44924226 ctattaaacaagtgttgcaagatgaatgttactaaaacacatatgtgtagtagtg 44924280  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 4682392 - 4682325
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    ||||||||||||||||||||| || ||||||||| | ||||||||| ||||||| |||||||||||||    
T  4682392 tctatattagtaactattaaacaagtgttgcaagataaatgttactaaaacacatatgtgtagtagtg 4682325  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 26205158 - 26205119
Alignment:
Q  20 atattagtaactattaaataaatgttgcaaggtgaatgtt 59  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  26205158 atattagtaactataaactaaatgttgcaaggtgaatgtt 26205119  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 53303293 - 53303361
Alignment:
Q  17 tctatattagtaacta-ttaaataaatgttgcaaggtgaatgttactgaaacacacatgtgtagtagtg 84  Q
    |||||||||||||||| ||||| || ||||||||| | ||||||||| ||||||| |||||||||||||    
T  53303293 tctatattagtaactacttaaacaagtgttgcaagataaatgttactaaaacacatatgtgtagtagtg 53303361  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8239063 - 8239114
Alignment:
Q  17 tctatattagtaactattaaataaatgttgcaaggtgaatgttactgaaaca 68  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||| |||||    
T  8239063 tctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaaca 8239114  T

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