View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_high_16 (Length: 204)
Name: NF19638_high_16
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 46466211 - 46466386
Alignment:
| Q |
13 |
agcaaaggggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
112 |
Q |
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| T |
46466211 |
agcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
46466310 |
T |
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| Q |
113 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
188 |
Q |
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| T |
46466311 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
46466386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 46471416 - 46471591
Alignment:
| Q |
13 |
agcaaaggggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
112 |
Q |
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| T |
46471416 |
agcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
46471515 |
T |
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| Q |
113 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
188 |
Q |
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| T |
46471516 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
46471591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 46344735 - 46344560
Alignment:
| Q |
13 |
agcaaaggggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
112 |
Q |
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| T |
46344735 |
agcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattccattt |
46344636 |
T |
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| Q |
113 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
188 |
Q |
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|| ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||| |
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| T |
46344635 |
ttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattg |
46344560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 46451821 - 46451996
Alignment:
| Q |
13 |
agcaaaggggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
112 |
Q |
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| T |
46451821 |
agcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattccattt |
46451920 |
T |
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| Q |
113 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
188 |
Q |
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|| ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||| |
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| T |
46451921 |
ttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattg |
46451996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 46462789 - 46462964
Alignment:
| Q |
13 |
agcaaaggggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttctttggttccatta |
112 |
Q |
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| T |
46462789 |
agcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttctttgattccattt |
46462888 |
T |
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| Q |
113 |
tttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattg |
188 |
Q |
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|| ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||| |
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| T |
46462889 |
ttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattg |
46462964 |
T |
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