View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_high_6 (Length: 338)
Name: NF19638_high_6
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2861933 - 2861615
Alignment:
| Q |
1 |
acaatccaaacaaaaacacaatcaaagccgaaggtatcatcgataaaatcttcaacctttggttaattttatttctccgaacaacaacagagtctaattc |
100 |
Q |
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| T |
2861933 |
acaatccaaacaaaaacacaatcaaagccgaaggtatcatcgataaaatcttcaacctttggttaattttatttctccgaacaacaacagagtctaattc |
2861834 |
T |
|
| Q |
101 |
ttcttctccatgttgttgttgtcgttctgaattatgtttgtcctcaccagcaccagtggtgaggacaagaaacagaacggcaacaagagcaatagccaat |
200 |
Q |
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| T |
2861833 |
ttcttctccatgttgttgttgtcgttctgaattatgtttgtcctcaccagcaccagtggtgaggacaagaaacagaacggcaacaagagcaatagccaat |
2861734 |
T |
|
| Q |
201 |
ccgtccaaactaaaccaaggacggactgtatcggttttagctgaagtagaagctaaatcttgttgatagcgaatatatttaatagcagagaaggcgaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2861733 |
ccgtccaaactaaaccaaggacggactgtatcggttttagctgaagtagaagctaaatcttgttgatagcgaatatatttaatagcagagaaggcgaact |
2861634 |
T |
|
| Q |
301 |
ggagtccctgagagagctg |
319 |
Q |
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||||||||||||||||||| |
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| T |
2861633 |
ggagtccctgagagagctg |
2861615 |
T |
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