View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_high_7 (Length: 324)
Name: NF19638_high_7
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 2316008 - 2316297
Alignment:
| Q |
16 |
ataatatcaaaattgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaaaatg |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2316008 |
ataatatcaaagttgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaa-atg |
2316106 |
T |
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| Q |
116 |
aagttgttgcacaaatatacccgaagattctttttccattgaagcctcaaaagacaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
215 |
Q |
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| T |
2316107 |
aagttgttgcacaaatatacccgaagattttttttccattgaagcctcaaaagccaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
2316206 |
T |
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| Q |
216 |
aagtcaacgacaaccatcggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagag |
306 |
Q |
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| T |
2316207 |
aagtcaacgacggccaccggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagag |
2316297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 2287965 - 2288254
Alignment:
| Q |
16 |
ataatatcaaaattgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaaaatg |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2287965 |
ataatatcaaagttgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaa-atg |
2288063 |
T |
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| Q |
116 |
aagttgttgcacaaatatacccgaagattctttttccattgaagcctcaaaagacaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
215 |
Q |
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| T |
2288064 |
aagttcttgcacaaatatacccaaagattttttttccattgaagcctcaaaagccaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
2288163 |
T |
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| Q |
216 |
aagtcaacgacaaccatcggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagag |
306 |
Q |
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| T |
2288164 |
aagtcaacgatggccaccggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcacattgaaccatgagag |
2288254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 18548058 - 18548223
Alignment:
| Q |
148 |
tttccattgaagcctcaaaagacaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc-------aagtcaacgacaaccatcggagctt |
240 |
Q |
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|||||||| || |||||||| |||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||| | |||||| |
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| T |
18548058 |
tttccattaaaatctcaaaagccaaaacatcgcatagaacatagatctggaaaatctcatcgacggcctccgaccaagtcaacgacggccaccagagctt |
18548157 |
T |
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| Q |
241 |
tcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagag |
306 |
Q |
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| T |
18548158 |
tcaacagtgacgatacattggcagttagttaacagagacgagatgtggcagattgaaccttgagag |
18548223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 18547969 - 18548034
Alignment:
| Q |
28 |
ttgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatg |
94 |
Q |
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| T |
18547969 |
ttgctgtttttcgctcaaattaaatagaatggaaatgaaaagttgat-ggagttgtagcttttcatg |
18548034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 37628080 - 37628211
Alignment:
| Q |
182 |
tagaacatagatctggaaaatttcatcaacggcc-------aagtcaacgacaaccatcggagctttcaacaatgacgatacgttggcagttagttaata |
274 |
Q |
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|||||||||||||| |||||| ||||||| |||| ||||||||||| ||| | ||||||||||| |||||| ||| |||||||||||||| | |
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| T |
37628080 |
tagaacatagatcttgaaaatctcatcaaaggccgccgaccaagtcaacgacggccaccagagctttcaacggtgacgaaacgctggcagttagttaaca |
37628179 |
T |
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| Q |
275 |
gagacgagatgcggcagattgaaccatgagag |
306 |
Q |
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| T |
37628180 |
gagacgagatgtggcagatagaatcttgagag |
37628211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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