View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19638_high_9 (Length: 307)
Name: NF19638_high_9
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 27426323 - 27426601
Alignment:
| Q |
20 |
cataggacaaaggtgatacataaatttacaaacttttctttttaataactacataacatagacatgaggtaacttcccttcataaacaacaagtgcacaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27426323 |
cataggacaaaggtgaaacataaatttacaaagttttctttttaataactacataacatagacatgaggtaacttcccttcataaagaacaagtgcacaa |
27426422 |
T |
|
| Q |
120 |
taacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426423 |
taacaattcagtaacaaggtcaattatttcactgaatgacacaggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagt |
27426522 |
T |
|
| Q |
220 |
acttagtaggctattttatatgacagggtttagtatgagacaatggctcacgaacctccacatggtgttttagaataat |
298 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426523 |
acttagtaggctatattatatgacagggtttagtatgagacaatggctcacgaacctccacatggtgttttagaataat |
27426601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 27416260 - 27416377
Alignment:
| Q |
107 |
aacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagag |
206 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
27416260 |
aacaagtacacaataccaattcatcaacaagggaaattatttcactgaatgacataggcctcattatatggttcctgttaggatatccttatctaaagaa |
27416359 |
T |
|
| Q |
207 |
ttgaatggttagtactta |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27416360 |
ttgaatggttagtactta |
27416377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 27420803 - 27420906
Alignment:
| Q |
110 |
aagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagttg |
209 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||||||| |||||| ||| |
|
|
| T |
27420803 |
aagtgtacaataacaattcagtaacaaagtcaattgtttcactgaatgacataggctgcattctatggtgcctgttaggatatccttatctaaagaattg |
27420902 |
T |
|
| Q |
210 |
aatg |
213 |
Q |
| |
|
|||| |
|
|
| T |
27420903 |
aatg |
27420906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 27569575 - 27569459
Alignment:
| Q |
109 |
caagtgcacaataacaattc-agtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagt |
207 |
Q |
| |
|
|||||||||||| ||||| | |||||||| |||||||||| |||| ||||||| | |||||||| ||||| ||||||||||||||||||| |||||| | |
|
|
| T |
27569575 |
caagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggttcctgttaggatatccttatctaaagaat |
27569476 |
T |
|
| Q |
208 |
tgaatggttagtactta |
224 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
27569475 |
tgaatggttactactta |
27569459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 27413358 - 27413423
Alignment:
| Q |
163 |
ggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtag |
228 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| | |||| ||||||||||| |||| ||||| |
|
|
| T |
27413358 |
ggcctcattctatggttcctgttaggatatccttatcttaagaattgaatggttattactgagtag |
27413423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 27565640 - 27565598
Alignment:
| Q |
118 |
aataacaattcagtaacaaggtcaattatttcactgaatgaca |
160 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
27565640 |
aataacaattcagtaacaaggtaaactattttactgaatgaca |
27565598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University