View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_low_1 (Length: 492)
Name: NF19638_low_1
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 8173671 - 8174146
Alignment:
| Q |
14 |
aatcaatcctaactaaaaaatatatctttgcattgatgattcggtaagagaacnnnnnnnnngattgaatttttatcaagtgggttattagagtatctta |
113 |
Q |
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| T |
8173671 |
aatcaatcctaactaaaaaatatatctttgcattgatgattcggtaagagaacaaaaaaaa-gattgaatttttatcaagagggttattagagtatctta |
8173769 |
T |
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| Q |
114 |
agcaatgaagaatgatacattaaaagaagagaatttagaaataaaaacttactggggttgttgaaattgggaagcggtgagagaagcttgggcgatgaag |
213 |
Q |
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| T |
8173770 |
agcaatgaagaatgatacattaaaagaagagaatttagaaataaaaacttactggggttgttgaaattgggaagcggtgagagaagcttgggcgatgaag |
8173869 |
T |
|
| Q |
214 |
ttgcgaagggaagggttttcaggtttggtggaaagcgatgagaaggttctggaagcggtgatgagatgaaaaggacgtgaagatgaaaatggtttgggag |
313 |
Q |
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| T |
8173870 |
ttgcgaagggaaggatttttaggtttggtggaaagcgatgagaaggttctggaagcggtgatgagatgaagaggacgtgaagatgaaaatggtttgggag |
8173969 |
T |
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| Q |
314 |
aagggagaaaagcatagtgtttgtgtctgaagaatctgagacaagatggagaatgaagtttaaggcgttgagcagtgtgaggttggttgatgatagagga |
413 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8173970 |
aagggagaaaagcatagtgtttgtgtttgaagaatctgagacaagatggagaatgaagtttaaggcgttgagcagtgtgaggttggttgatgatagagga |
8174069 |
T |
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| Q |
414 |
taaagctgaagccatatccttaaactg----tgaatgaatgaatgaattgaaacacaaactcacatgatgatgatgt |
486 |
Q |
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| T |
8174070 |
taaagctgaagccatatccttaaactgtgaatgaatgaatgaatgaattgaaacacaaactcacatgatgatgatgt |
8174146 |
T |
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