View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19638_low_12 (Length: 294)

Name: NF19638_low_12
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19638_low_12
NF19638_low_12
[»] chr1 (5 HSPs)
chr1 (23-294)||(46451559-46451831)
chr1 (26-294)||(46344725-46344991)
chr1 (26-294)||(46462533-46462799)
chr1 (125-289)||(46471257-46471421)
chr1 (170-289)||(46466097-46466216)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 46451559 - 46451831
Alignment:
Q  23 acttatactcgttcaccaaaggtgagcatactagtaaataaaattatctttgtttgttcttaattatgtgaaagaa-attaattttgcaaagtactaaat 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  46451559 acttatactcgttcaccaaaggtgagcatagtagtaaataaaattatctttattttttcttaattatgtgaaagaagattaattttgcaaattactaaat 46451658  T
Q  122 taagtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagca 221  Q
    |  |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46451659 ttggtcaaaatttatgagacccttttaataaataatgatgatgataatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagca 46451758  T
Q  222 cctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaatggac 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46451759 cctgaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggac 46451831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 26 - 294
Target Start/End: Complemental strand, 46344991 - 46344725
Alignment:
Q  26 tatactcgttcaccaaaggtgagcatactagtaaata-aaattatctttgtttgttcttaattatgtgaaagaaattaattttgcaaagtactaaattaa 124  Q
    ||||||||| ||||||||||||||||| ||| ||| | |||| ||||||||||  ||| |||| |||| ||||  ||| || |||||||| |||| ||      
T  46344991 tatactcgtgcaccaaaggtgagcatagtagcaaaaataaatcatctttgttttctctgaattgtgtgcaaga--ttagttatgcaaagtgctaattttg 46344894  T
Q  125 gtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 224  Q
     | ||||||||| || || ||||| ||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46344893 tttaaaatttattaggcccttttattaattt-taataatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 46344795  T
Q  225 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaatggac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46344794 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggac 46344725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 46462533 - 46462799
Alignment:
Q  26 tatactcgttcaccaaaggtgagcatactagtaaata-aaattatctttgtttgttcttaattatgtgaaagaaattaattttgcaaagtactaaattaa 124  Q
    ||||||||| ||||||||||||||||| ||| ||| | |||| ||||||||||  ||| |||| |||| ||||  ||| || |||||||| |||| ||      
T  46462533 tatactcgtgcaccaaaggtgagcatagtagcaaaaataaatcatctttgttttctctgaattgtgtgcaaga--ttagttatgcaaagtgctaattttg 46462630  T
Q  125 gtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 224  Q
     | ||||||||| || || ||||| ||| |  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46462631 tttaaaatttattaggcccttttattaattt-taataatgaaaatatggcagatgagcacaaaattttcggatttgatggcttttggtgggccagcacct 46462729  T
Q  225 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaatggac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46462730 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaaaggac 46462799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 125 - 289
Target Start/End: Original strand, 46471257 - 46471421
Alignment:
Q  125 gtcaaaatttatgagacctttttaataaataataatgatgaaaatatggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacct 224  Q
    ||||||||| |||||||||| | ||| | |||| ||||| | |  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  46471257 gtcaaaattaatgagaccttctaaatgattaatgatgattatataatggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacct 46471356  T
Q  225 gaaagaatcaatggaaggttggctatgattggttttgtagcagcaatgggggtggaaatagcaaa 289  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  46471357 gaaagaatcaatggaaggttggctatgattggttttgtatctgcaatgggggtggaattagcaaa 46471421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 46466097 - 46466216
Alignment:
Q  170 atggcagatgagcacaaagttttcggatttgatggcttttggtgggccagcacctgaaagaatcaatggaaggttggctatgattggttttgtagcagca 269  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  46466097 atggcagataagcacaaagttttcggatttgatggcttttggtggggcagcacctgaaagaatcaatggaaggttggctatgattggttttgtatctgca 46466196  T
Q  270 atgggggtggaaatagcaaa 289  Q
    |||||||||||| |||||||    
T  46466197 atgggggtggaattagcaaa 46466216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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