View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_low_17 (Length: 237)
Name: NF19638_low_17
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 40389090 - 40389311
Alignment:
| Q |
16 |
gctttatctggcaaatattaactatagaaaatttaaatgcataaacatcacttacaagctgttaatgtaaggttcagtattcttttaataccgaagtact |
115 |
Q |
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| T |
40389090 |
gctttatctggcaaatattaactatagaaaaattaaatgcataaacatcacttacaagctgttaatgtaaggttcagtattctcttaataccgaagtact |
40389189 |
T |
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| Q |
116 |
aaattgacactagaaaaatgttataatctaatggtagaaacaatatcatttatgcaatgtacgtcataagcagtaattatggctgtgaannnnnnnngtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
40389190 |
aaattgacactagaaaaatgttataatctaatggtagaaacaatatcatttatgcaatgtacgtcataagcagtaattatggctgtcaattttttttgtt |
40389289 |
T |
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| Q |
216 |
gactaatttatcaaagttagtc |
237 |
Q |
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|||||||||||| ||||||||| |
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| T |
40389290 |
gactaatttatctaagttagtc |
40389311 |
T |
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