View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_low_2 (Length: 456)
Name: NF19638_low_2
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 46451803 - 46452230
Alignment:
| Q |
16 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
115 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451803 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46451902 |
T |
|
| Q |
116 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451903 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46452002 |
T |
|
| Q |
216 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttctataggaagacgattaaggtttagggtttatgatta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452003 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttctataggaagacgattaaggtttagggtttatgatta |
46452102 |
T |
|
| Q |
316 |
ggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcata-ttttttatcattgatttgaagcaaatttcttgatgttgattaaagc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452103 |
ggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatatttttttatcattgatttgaagcaaatttcttgatgttgattaaagc |
46452202 |
T |
|
| Q |
415 |
ctaaaagcttgtaattgtcacaaaattg |
442 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
46452203 |
ctaaaagcttgtaattgtcacaaaattg |
46452230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 46344753 - 46344489
Alignment:
| Q |
16 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
115 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344753 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46344654 |
T |
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| Q |
116 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344653 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46344554 |
T |
|
| Q |
216 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttct |
280 |
Q |
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| T |
46344553 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46344489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 46462771 - 46463035
Alignment:
| Q |
16 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
115 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462771 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46462870 |
T |
|
| Q |
116 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462871 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46462970 |
T |
|
| Q |
216 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttct |
280 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462971 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46463035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 46471399 - 46471756
Alignment:
| Q |
17 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
116 |
Q |
| |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46471399 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46471498 |
T |
|
| Q |
117 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
216 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46471499 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46471598 |
T |
|
| Q |
217 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa-tagatttctataggaagacgattaagg--tttagggtttatgat |
313 |
Q |
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||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |||| || |||||| | | |||||| | | |||||||| || | |
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| T |
46471599 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaagtagagttttatagggacatgattaaagtctatagggtttgtggt |
46471698 |
T |
|
| Q |
314 |
taggagccaatacatgaaactttatgtatattcgtatggaatttcataaagcatatttt |
372 |
Q |
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||| |||||| | || ||| |||||||||||| |||| |||||| |||| ||||||| |
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| T |
46471699 |
tagaagccaa-agatagaaccttatgtatattcttatgtaatttcttaaataatatttt |
46471756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 46466194 - 46466448
Alignment:
| Q |
17 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
116 |
Q |
| |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46466194 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46466293 |
T |
|
| Q |
117 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
216 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46466294 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46466393 |
T |
|
| Q |
217 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa |
271 |
Q |
| |
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||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |
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|
| T |
46466394 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaa |
46466448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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