View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19638_low_3 (Length: 430)
Name: NF19638_low_3
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 23043883 - 23043483
Alignment:
| Q |
15 |
tatgcatagtaatgaaaggattaacatatattttgtttgtttatgagaaagtggttcatcataactggtagacccataaacaactacaatcacatgacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23043883 |
tatgcatagtaatgaaaggattaacatatatttcatttgttcatgagaaagtggttcatcataactggtaggcccataaacaactacaatcacatgacaa |
23043784 |
T |
|
| Q |
115 |
acataaacaacaaataatagatgctttagattgtgcatcaagagttagccatggcttgtactctgattgacaacaaaatagtcattgttggttagacaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23043783 |
acataaacaacaaataatagatgctttagattgtgcatcaagagttagccatggcttgtactctgattaacaacaaaatagtcattgttggttagacaca |
23043684 |
T |
|
| Q |
215 |
aaataggttaagcattctacatatttaacatagatattgtccttcaaaagatgttcatggtaagacctacttcttctcaagcttaggtgtctttgcatac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23043683 |
aaataggttaagcattctacatatttaacatagatattgtccttcaaaagatgttcctggtaagacctacttcttctcaagcttaggtgtctttggatac |
23043584 |
T |
|
| Q |
315 |
tttcggttgttggcaaacttagtggatgaaagttgggttggctgaatatcttaagcaccaggctttgtagcagaatcagattcatcttgagacaatcttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23043583 |
tttcggttgttggcaaacttagtggatgaaagttgggttggctgaatatcttcagcaccaggctttgtagcagaatcagattcatcttgagacaatcttt |
23043484 |
T |
|
| Q |
415 |
t |
415 |
Q |
| |
|
| |
|
|
| T |
23043483 |
t |
23043483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University