View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_low_4 (Length: 360)
Name: NF19638_low_4
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 46962660 - 46962318
Alignment:
| Q |
1 |
ataaagtactataaaacaatagtctcctattatatccagaagatcctagaaatattcaaacctaaccttagaacataaacttagttaaagaagaatcatg |
100 |
Q |
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| T |
46962660 |
ataaagtactataaaacaatagtctcctattatatccagaagatcctagaaatattcaaacctaaccttagaacataaacttagttaaagaagaatcatg |
46962561 |
T |
|
| Q |
101 |
catggatttcagttgtaacttgtatcagagacccttaacagtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46962560 |
catggatttcagttgtaacttgtatcagagacccttaactgtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggt |
46962461 |
T |
|
| Q |
201 |
tccaccattcgattttggatatatttccacctctgatgtggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccat |
300 |
Q |
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| T |
46962460 |
tccaccattcgattttggatatatttccacctctgatgtggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccat |
46962361 |
T |
|
| Q |
301 |
acggtttctccacgtgattgaaagtgccccgtcggggatatgg |
343 |
Q |
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| T |
46962360 |
acggtttctccatgtgattgaaagtgccccgtcggggatatgg |
46962318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 311
Target Start/End: Complemental strand, 25185009 - 25184825
Alignment:
| Q |
126 |
cagagacccttaacagtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggatatatt |
225 |
Q |
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||||||||||||| |||| || ||||||||||||| ||| | |||||||||||||||||||||||||| |||| || |||||||| | |||| || | |
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| T |
25185009 |
cagagacccttaattgtgatgcgagtgcaatttcttcagcatc-aaaactaagaccctgatactggtttt-gggtctcaacattcgatgtcggatctact |
25184912 |
T |
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| Q |
226 |
tccacctctgatgt-ggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctcc |
311 |
Q |
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||||||||| || || |||||||| ||||| || ||||||||||| |||||| ||||||||||||||||| ||| ||||||||| |
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| T |
25184911 |
tccacctctattggaggcagtgattcatccattgtcaatgatgcatccttttcatacatcttaaaaatccaatcatctggtttctcc |
25184825 |
T |
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