View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19638_low_5 (Length: 338)

Name: NF19638_low_5
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19638_low_5
NF19638_low_5
[»] chr6 (12 HSPs)
chr6 (143-323)||(27863506-27863684)
chr6 (34-105)||(27863765-27863836)
chr6 (33-105)||(24497565-24497636)
chr6 (20-105)||(9231832-9231916)
chr6 (32-105)||(13627606-13627678)
chr6 (20-105)||(24694629-24694713)
chr6 (48-105)||(28750656-28750712)
chr6 (33-105)||(1727924-1727995)
chr6 (33-105)||(13103109-13103180)
chr6 (62-105)||(34103751-34103794)
chr6 (42-105)||(14309798-14309860)
chr6 (48-97)||(11084664-11084712)
[»] chr4 (23 HSPs)
chr4 (32-105)||(47084078-47084150)
chr4 (36-105)||(10094387-10094455)
chr4 (20-105)||(17888528-17888612)
chr4 (58-105)||(12792246-12792293)
chr4 (20-105)||(1535837-1535921)
chr4 (34-105)||(46474060-46474130)
chr4 (32-105)||(25954816-25954888)
chr4 (32-105)||(49284423-49284495)
chr4 (58-105)||(9742548-9742595)
chr4 (32-94)||(19124728-19124789)
chr4 (20-102)||(36851365-36851446)
chr4 (20-105)||(20818633-20818717)
chr4 (20-105)||(31377456-31377539)
chr4 (32-105)||(34241059-34241131)
chr4 (32-105)||(36012175-36012247)
chr4 (32-105)||(37801254-37801326)
chr4 (20-105)||(322522-322611)
chr4 (35-105)||(35322697-35322766)
chr4 (48-105)||(11054522-11054578)
chr4 (48-105)||(50328862-50328918)
chr4 (20-107)||(35019000-35019085)
chr4 (77-107)||(46583575-46583605)
chr4 (48-105)||(16338219-16338275)
[»] chr1 (23 HSPs)
chr1 (32-109)||(10907638-10907714)
chr1 (20-105)||(38859917-38860001)
chr1 (20-107)||(47022766-47022852)
chr1 (33-105)||(30745410-30745481)
chr1 (33-105)||(30766861-30766932)
chr1 (40-105)||(42456638-42456702)
chr1 (32-104)||(49902535-49902606)
chr1 (20-107)||(5975052-5975138)
chr1 (32-107)||(14796940-14797014)
chr1 (32-107)||(14805814-14805888)
chr1 (35-105)||(37189706-37189774)
chr1 (20-105)||(10155994-10156078)
chr1 (59-106)||(44107404-44107451)
chr1 (20-94)||(42517272-42517345)
chr1 (20-105)||(3346852-3346936)
chr1 (20-105)||(48392384-48392468)
chr1 (62-109)||(44462497-44462544)
chr1 (48-109)||(30252750-30252811)
chr1 (48-105)||(5558375-5558430)
chr1 (48-105)||(7742785-7742841)
chr1 (48-105)||(26835404-26835460)
chr1 (65-105)||(23908351-23908391)
chr1 (77-105)||(29149582-29149610)
[»] chr7 (15 HSPs)
chr7 (20-105)||(44164721-44164805)
chr7 (20-105)||(34707182-34707266)
chr7 (27-105)||(10334244-10334321)
chr7 (32-105)||(10576739-10576811)
chr7 (32-105)||(24320429-24320501)
chr7 (20-105)||(34259584-34259668)
chr7 (38-105)||(19334556-19334622)
chr7 (48-105)||(15017839-15017895)
chr7 (32-105)||(17303104-17303176)
chr7 (20-105)||(29238121-29238205)
chr7 (32-105)||(33057647-33057719)
chr7 (48-96)||(43342485-43342532)
chr7 (58-105)||(29555954-29556001)
chr7 (35-105)||(32876523-32876592)
chr7 (20-105)||(29981091-29981175)
[»] chr3 (24 HSPs)
chr3 (32-105)||(10839370-10839442)
chr3 (32-105)||(43347326-43347398)
chr3 (33-105)||(1781828-1781899)
chr3 (35-105)||(6280352-6280421)
chr3 (20-105)||(8950482-8950566)
chr3 (20-107)||(32352911-32352997)
chr3 (32-105)||(20382585-20382656)
chr3 (48-105)||(8926832-8926888)
chr3 (32-105)||(21853263-21853335)
chr3 (40-105)||(22845360-22845424)
chr3 (48-105)||(54546970-54547026)
chr3 (18-105)||(13856165-13856251)
chr3 (27-105)||(36539698-36539775)
chr3 (43-105)||(40845918-40845979)
chr3 (32-98)||(44994958-44995023)
chr3 (32-105)||(3178769-3178841)
chr3 (32-105)||(19649362-19649434)
chr3 (37-105)||(46685779-46685845)
chr3 (48-105)||(50663200-50663256)
chr3 (58-105)||(5391523-5391570)
chr3 (42-105)||(39352260-39352321)
chr3 (62-105)||(48206920-48206962)
chr3 (32-105)||(27642726-27642798)
chr3 (77-105)||(23467528-23467556)
[»] chr5 (21 HSPs)
chr5 (32-109)||(10115222-10115298)
chr5 (35-107)||(36769067-36769138)
chr5 (32-105)||(27916206-27916278)
chr5 (20-105)||(38397664-38397748)
chr5 (22-105)||(8456943-8457025)
chr5 (20-105)||(6257388-6257472)
chr5 (20-105)||(23218551-23218635)
chr5 (32-105)||(37169023-37169095)
chr5 (20-105)||(39862465-39862549)
chr5 (58-105)||(42119688-42119735)
chr5 (48-105)||(614398-614454)
chr5 (40-105)||(29491412-29491475)
chr5 (58-105)||(10081211-10081258)
chr5 (49-103)||(33188330-33188383)
chr5 (35-105)||(33271263-33271332)
chr5 (33-105)||(3341111-3341182)
chr5 (32-105)||(16618560-16618632)
chr5 (34-97)||(6174820-6174882)
chr5 (32-107)||(10052490-10052564)
chr5 (58-105)||(11856361-11856408)
chr5 (41-105)||(29790218-29790281)
[»] chr8 (16 HSPs)
chr8 (20-105)||(33934347-33934431)
chr8 (32-105)||(35806860-35806932)
chr8 (20-105)||(21525424-21525508)
chr8 (20-105)||(22324662-22324746)
chr8 (20-105)||(42072494-42072578)
chr8 (34-105)||(16818965-16819035)
chr8 (32-105)||(16523172-16523244)
chr8 (36-105)||(16591369-16591437)
chr8 (36-109)||(19334845-19334917)
chr8 (32-105)||(26021462-26021534)
chr8 (27-105)||(2824167-2824244)
chr8 (48-105)||(10112113-10112169)
chr8 (48-107)||(2271259-2271317)
chr8 (42-105)||(42013938-42014000)
chr8 (58-105)||(43282866-43282913)
chr8 (49-105)||(24065339-24065394)
[»] chr2 (14 HSPs)
chr2 (20-105)||(29846508-29846592)
chr2 (20-105)||(42769736-42769820)
chr2 (27-105)||(14942029-14942106)
chr2 (42-105)||(19181614-19181676)
chr2 (41-107)||(14539703-14539768)
chr2 (35-105)||(43139813-43139882)
chr2 (32-105)||(40277278-40277350)
chr2 (21-105)||(14186417-14186500)
chr2 (58-105)||(40780121-40780169)
chr2 (58-105)||(41674721-41674768)
chr2 (20-105)||(3956638-3956722)
chr2 (33-105)||(6318448-6318520)
chr2 (58-105)||(2888107-2888154)
chr2 (48-105)||(28321709-28321765)
[»] scaffold0086 (1 HSPs)
scaffold0086 (48-105)||(20837-20893)
[»] scaffold0079 (1 HSPs)
scaffold0079 (48-105)||(54585-54641)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 27863684 - 27863506
Alignment:
Q  143 tccaaactttgtaacaatcctgacttcgccacacactaacacataatatgagaagtcaggaaactcatagctttaacaaacattctccctcagcacaatt 242  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  27863684 tccaaactttataacaatcctcactccgccacacactaacacataatatgagaagttaggaaactcatagctttaacaaactttctccctcagcacaatt 27863585  T
Q  243 acttgacacaaagagaattatagttggagaaacccaatcaatcttgattaatttcagcttcattgataggttttaatataa 323  Q
    ||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27863584 actcgacac--agagaattatagttggagaaacccaatcaatctttattaatttcagcttcattgataggttttaatataa 27863506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 27863836 - 27863765
Alignment:
Q  34 gctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27863836 gctccgacccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaatt 27863765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 24497565 - 24497636
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  24497565 ggctccggcccaaattttttgcaatttt-ttgtgtaaattcctctgaatttcttatataaacccctataaatt 24497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 9231832 - 9231916
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||  |||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||    
T  9231832 gggcactcgcccgggctccgggccaatttttttgcaattt-cttgtgtaaatctctatgaatttcttatataaacccctataaatt 9231916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 13627678 - 13627606
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  13627678 gggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 13627606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 24694629 - 24694713
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||| ||||||||||    
T  24694629 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaactcctataaatt 24694713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 28750656 - 28750712
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  28750656 tttttgcaattt-cttatgtaaattcttctgaatttcttatataaacccctataaatt 28750712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 1727924 - 1727995
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  1727924 ggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 1727995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 13103109 - 13103180
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| ||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||  ||||||||    
T  13103109 ggctctggctcaaattttttgcaatttt-ttatgtaaattcctctgaatttcttatataaacctttataaatt 13103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 34103794 - 34103751
Alignment:
Q  62 ttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  34103794 ttatgtaaattcctctgaatttcttatataaacccgtataaatt 34103751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 14309798 - 14309860
Alignment:
Q  42 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||||||||||| ||| |||||||  || ||||||||||||||||| |||||||||||    
T  14309798 ccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaatccctataaatt 14309860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 11084712 - 11084664
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccc 97  Q
    |||||||||||| ||| |||||||| || |||||||||||||||||||||    
T  11084712 tttttgcaattt-cttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 47084150 - 47084078
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47084150 gggctccggcctaaattttttgcaattt-cttatgtaaatttctctgaatttcttatataaacccctataaatt 47084078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 10094387 - 10094455
Alignment:
Q  36 tccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10094387 tccggcccaaattttttgtaattt-cttatgtaaatttctctgaatttcttatataaacccctataaatt 10094455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 17888528 - 17888612
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||||||||| ||||| |||||| |||||||||||| || |||||||||||||||| ||||||||||||    
T  17888528 gggcactcgcccgggctccggcccaaatttttttcaattt-cttatgtaaattcctatgaatttcttatataaccccctataaatt 17888612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 12792246 - 12792293
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12792246 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 12792293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 1535921 - 1535837
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  1535921 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 1535837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 46474130 - 46474060
Alignment:
Q  34 gctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||| |||||||||||| |||||||||||| || ||||||| |||||||||||| ||||||||    
T  46474130 gctccggcccaaattttttgcaattt-cttatgtaaattcctgtgaattttttatataaacccatataaatt 46474060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25954888 - 25954816
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||||||| || |||||||||||||||||| ||||||||||    
T  25954888 gggctccgggccaaattttttgcaattt-cttgtgtaaattcctatgaatttcttatataaactcctataaatt 25954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 49284495 - 49284423
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  49284495 gggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 49284423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 9742548 - 9742595
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  9742548 tttcttatgtaaattcctctgaatttcttatattaacccctataaatt 9742595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 19124728 - 19124789
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaac 94  Q
    ||||||||||| ||  |||||||||||| |||||||||||| |||||||||||||||||||||    
T  19124728 gggctccggcctaatttttttgcaattt-cttatgtaaattcctctgaatttcttatataaac 19124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 36851365 - 36851446
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataa 102  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || ||||||| ||||||||||||||||||    
T  36851365 gggcactcgcctgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttattatataaacccctataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 20818717 - 20818633
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| |||||| | |||||| |||||||||||| ||| |||||||  || |||||||||||||||||| ||||||||||    
T  20818717 gggcactcgcccgggctctgacccaaattttttgcaattt-cttttgtaaatccctatgaatttcttatataaactcctataaatt 20818633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 31377539 - 31377456
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||||||||| ||||| |||||| |||||||||||  || |||||||||||||||| || |||||||||    
T  31377539 gggcactcgcccgggctccggcccaaatttttt-caattt-cttatgtaaatccctatgaatttcttatataaccctctataaatt 31377456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 34241131 - 34241059
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||| ||  || |||||||||||||||||||||||||||||    
T  34241131 gggctccgggccaaattttttgcaattt-cttgtgtagatccctatgaatttcttatataaacccctataaatt 34241059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 36012175 - 36012247
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| ||| ||||| ||||||||||||| || |||||||  || |||||||||||||||||||||||||||||    
T  36012175 gggcttcgggccaaattttttgcaatttt-ttgtgtaaatccctatgaatttcttatataaacccctataaatt 36012247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 37801254 - 37801326
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| | ||| |||||||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||    
T  37801254 gggctccgggctaaattttttgcaattt-cttgtgtaaatttctatgaattttttatataaatccctataaatt 37801326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 322522 - 322611
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaa----tttcttatataaacccctataaatt 105  Q
    |||||| |||| |||||  | |||||| ||||||||||||| | ||||||||| |||||||    |||||||||||||||||||||||||    
T  322522 gggcacgcgcccgggctatgacccaaattttttgcaattttttaatgtaaattcctctgaaggaatttcttatataaacccctataaatt 322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 35322697 - 35322766
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||||  |||||| |||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  35322697 ctccgacccaatttttttgtaatttt-ttatataaatttctctgaatctcttatataaacctctataaatt 35322766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 11054578 - 11054522
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||||||||||  || ||||||||||||||||||| |||||||||    
T  11054578 tttttgcaattt-cttatgtaaatccctatgaatttcttatataaacctctataaatt 11054522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 50328918 - 50328862
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| ||| |||||||| |||| ||||||||||||||||| |||||||||    
T  50328918 tttttgcaattt-cttttgtaaattcctcttaatttcttatataaacctctataaatt 50328862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 35019085 - 35019000
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||| |||| |||||| || ||||| ||||| |||||| ||| |||||||  || |||||||||||||||||||| ||||||||||    
T  35019085 gggcactcgcccgggctctgggccaaattttttacaattt-cttgtgtaaatc-ctatgaatttcttatataaacccttataaattag 35019000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 46583575 - 46583605
Alignment:
Q  77 tgaatttcttatataaacccctataaattag 107  Q
    |||||||||||||||||||||||||||||||    
T  46583575 tgaatttcttatataaacccctataaattag 46583605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 16338219 - 16338275
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||| || |||||||| || ||||||| ||||||||| |||||||||||    
T  16338219 tttttgcaatttt-ttgtgtaaattcctatgaattttttatataaatccctataaatt 16338275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 10907638 - 10907714
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattagac 109  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  10907638 gggctccggcccaaattttttgcaattt-cttatgtaaattcctctgaatttcttatataaacccctataaatcagac 10907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 38860001 - 38859917
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||||||||| ||||| |||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  38860001 gggcactcgcccgggctccggcccaaatttttttcaattt-cttatgtaaattcctatgaatttcttatataaacccctataaatt 38859917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 47022852 - 47022766
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| ||||||| ||| |||||||||||||||||| ||||||||||||    
T  47022852 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatctctatgaatttcttatataaactcctataaattag 47022766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 30745481 - 30745410
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||| ||||||  |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  30745481 ggctccgacccaaatattttgcaatttt-ttatgtaaatttctctgaatttcttttataaatccctataaatt 30745410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 30766932 - 30766861
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||| ||||||  |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  30766932 ggctccgacccaaatattttgcaatttt-ttatgtaaatttctctgaatttcttttataaatccctataaatt 30766861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 42456702 - 42456638
Alignment:
Q  40 gcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||| ||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||    
T  42456702 gcccaaattttttgctattt-cttatgtaaattcctatgaatttcttatataaacccctataaatt 42456638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 49902606 - 49902535
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaat 104  Q
    ||||||||| ||||| |||||||||||| ||| |||||||  || ||||||||||||||||||||||||||||    
T  49902606 gggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaat 49902535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 5975138 - 5975052
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||| |||| ||||||||| ||||| ||||| |||||| ||| |||||||  ||  ||||||||||||||||||||||||||||||    
T  5975138 gggcactcgcccgggctccgggccaaatttttttcaattt-cttgtgtaaatccctaagaatttcttatataaacccctataaattag 5975052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 14797014 - 14796940
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||||| |||| | ||||||||||||| ||||||||||| |||||||||||||||||| || | ||||||||||    
T  14797014 gggctccgacccataatttttgcaatttt-ttatgtaaattcctctgaatttcttatatacacacttataaattag 14796940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 14805888 - 14805814
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||||| |||| | ||||||||||||| ||||||||||| |||||||||||||||||| || | ||||||||||    
T  14805888 gggctccgacccataatttttgcaatttt-ttatgtaaattcctctgaatttcttatatacacacttataaattag 14805814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 37189774 - 37189706
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| | |||||||||    
T  37189774 ctccggcccaaa-tttttgcaattt-cttatgtaaatctctatgaatttcttatataaatctctataaatt 37189706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 10155994 - 10156078
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||  |||||||||||| ||| |||||||| || ||||||||||||||||||  |||||||||    
T  10155994 gggcactcgcccgggctccgggccaatttttttgcaattt-cttgtgtaaattcctatgaatttcttatataaacttctataaatt 10156078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 44107404 - 44107451
Alignment:
Q  59 ttcttatgtaaatttctctgaatttcttatataaacccctataaatta 106  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  44107404 ttcttatgtaaattcctctgatttttttatataaacccctataaatta 44107451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 42517272 - 42517345
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaac 94  Q
    |||||| |||| ||||||||| ||||| ||||||||| |||||| |||||||  || ||||||||||||||||||    
T  42517272 gggcactcgcccgggctccgggccaaattttttgcaa-tttcttgtgtaaatccctatgaatttcttatataaac 42517345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 3346936 - 3346852
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| | ||| ||| ||||| ||||||||||||  || |||||||  || |||||||||||||||||||||||||||||    
T  3346936 gggcactcgcccgagcttcgggccaaattttttgcaatttg-ttgtgtaaatccctatgaatttcttatataaacccctataaatt 3346852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 48392384 - 48392468
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||  ||||  |||||||||||| ||| |||||||  || ||||||||||||||||| |||||||||||    
T  48392384 gggcactcgcccgggctccgagccaatttttttgcaattt-cttgtgtaaatccctatgaatttcttatataaatccctataaatt 48392468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 44462497 - 44462544
Alignment:
Q  62 ttatgtaaatttctctgaatttcttatataaacccctataaattagac 109  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||||    
T  44462497 ttatgtaaatctatctgaatttcttatacaaacctctataaattagac 44462544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 30252750 - 30252811
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttctt-atataaacccctataaattagac 109  Q
    ||||||||||||| |||| ||||||| ||||||||| || ||||||| |||||||||||||||    
T  30252750 tttttgcaatttt-ttatataaatttttctgaatttttttatataaatccctataaattagac 30252811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 5558430 - 5558375
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| ||||||||||  | || ||||||||||||||||||||||||||||    
T  5558430 tttttgcaattt-cttatgtaaacct-tccgaatttcttatataaacccctataaatt 5558375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 7742785 - 7742841
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| ||| |||||||   | |||||||||||||||||||||||||||||    
T  7742785 tttttgcaattt-cttgtgtaaatccttatgaatttcttatataaacccctataaatt 7742841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 26835460 - 26835404
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||  |||||||||||  | |||||||||||||||||| ||||||||||    
T  26835460 tttttgcaattta-ttatgtaaattcatatgaatttcttatataaactcctataaatt 26835404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 23908391 - 23908351
Alignment:
Q  65 tgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||| || ||||||||||||||||| |||||||||||    
T  23908391 tgtaaattcctatgaatttcttatataaatccctataaatt 23908351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 29149582 - 29149610
Alignment:
Q  77 tgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||||||||||||||||||    
T  29149582 tgaatttcttatataaacccctataaatt 29149610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 44164721 - 44164805
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  44164721 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatttctatgaatttcttatataaacccctataaatt 44164805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 34707266 - 34707182
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  34707266 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 34707182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 10334321 - 10334244
Alignment:
Q  27 cgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| |||||| |||||||  |||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||    
T  10334321 cgcccgggctctggcccaatttttttgcaattt-cttatgtaaattcctctgaatttcttatataaactcttataaatt 10334244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 10576811 - 10576739
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  10576811 gggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 10576739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 24320429 - 24320501
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||||||| ||  ||||||||||||||||||||||||||||    
T  24320429 gggctccgggccaaattttttgcaattt-cttgtgtaaattcctacgaatttcttatataaacccctataaatt 24320501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 34259668 - 34259584
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||  |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  34259668 gggcactcgcccgggctccgggccaatttttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 34259584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 19334556 - 19334622
Alignment:
Q  38 cggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||  |||||||||||| |||||||||||  || |||||||||||||||||||||||||||||    
T  19334556 cggcccaatttttttgcaattt-cttatgtaaatacctatgaatttcttatataaacccctataaatt 19334622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 15017895 - 15017839
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||    
T  15017895 tttttgcaattt-cttatgtaaattcctctgaatttcttatataaacgcgtataaatt 15017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 17303104 - 17303176
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||| |||||  |||||||||||| |||||||||||| || |||||||||||||||||||| | ||||||    
T  17303104 gggctccgacccaatttttttgcaattt-cttatgtaaattcctatgaatttcttatataaacccttgtaaatt 17303176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 29238121 - 29238205
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||  |||||||||||| ||| |||||||  || ||||||||||||||||||||||| |||||    
T  29238121 gggcactcgcccgggctccgggccaatttttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctaaaaatt 29238205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 33057647 - 33057719
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||  ||||| |||||| |||||||||||  || |||||||||||||||| ||||||||||||    
T  33057647 gggctccggcccaattttttttcaattt-cttatgtaaatccctatgaatttcttatataatcccctataaatt 33057719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 43342532 - 43342485
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaaccc 96  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  43342532 tttttgcaattt-cttatgtaaattcctctgaatttcttatataaaccc 43342485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 29555954 - 29556001
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||||||| || |||||||||||||||||||||||||||||    
T  29555954 tttcttgtgtaaattcctatgaatttcttatataaacccctataaatt 29556001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 32876523 - 32876592
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| ||||| |||||||||||| ||| |||| ||  || |||||||||||||||||||||||||||||    
T  32876523 ctccgggccaaattttttgcaattt-cttgtgtagatccctatgaatttcttatataaacccctataaatt 32876592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 29981091 - 29981175
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||   ||||||||||| ||| |||||||  || ||||||||||||||||||  |||||||||    
T  29981091 gggcactcgcccgggctccgggccaattcttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacttctataaatt 29981175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 10839370 - 10839442
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  10839370 gggctccgacccaaattttttgcaattt-cttatgtaaatttctctgaatttcttatataaacctctataaatt 10839442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 43347326 - 43347398
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  43347326 gggctccgacccaaattttttgcaattt-cttatgtaaattcctctgaatttcttatataaacccctacaaatt 43347398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 1781899 - 1781828
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||| |||||||    
T  1781899 ggctctggcccaaattttttgcaattt-cttatgtaaatccctctgaatttcttatataaaccccaataaatt 1781828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 6280352 - 6280421
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||| ||| ||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  6280352 ctccggcctaaattttgtgcaattt-cttatgtaaatttccctgaatttcttatataaacctctataaatt 6280421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 8950482 - 8950566
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| |||||| || ||||| |||||||||||| ||| |||||||| || ||||||||||||||||| |||||||||||    
T  8950482 gggcactcgcccgggctctgggccaaattttttgcaattt-cttgtgtaaattcctatgaatttcttatataaatccctataaatt 8950566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 32352997 - 32352911
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||| |||| ||||||||| ||||  |||||||||||| ||| | |||||  || |||||||||||||||||||||||||||||||    
T  32352997 gggcactcgcccgggctccgggccaatttttttgcaattt-cttgtataaatccctatgaatttcttatataaacccctataaattag 32352911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 20382656 - 20382585
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||| |||||  |  ||||||||||||||  || |||||||||||||||||||||||||||||    
T  20382656 gggctccggcccaaatttttttaa--tttcttatgtaaatccctatgaatttcttatataaacccctataaatt 20382585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 8926888 - 8926832
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| | |||||||||| |||||||||||| |||||||||||||||||||    
T  8926888 tttttgcaattt-catatgtaaattcctctgaatttctgatataaacccctataaatt 8926832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 21853335 - 21853263
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| |||||||  || ||||||||||||||||| |||||||||||    
T  21853335 gggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaaaccctataaatt 21853263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 22845360 - 22845424
Alignment:
Q  40 gcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||| |||||||||||| ||||||||||||   || |||||||||||||||||||||||||||    
T  22845360 gcccaaattttttgcaattt-cttatgtaaattcacctaaatttcttatataaacccctataaatt 22845424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 54547026 - 54546970
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||| ||||||| || |||||||||||||||||||||||||||||    
T  54547026 tttttgcaattt-cttacgtaaattcctttgaatttcttatataaacccctataaatt 54546970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 13856251 - 13856165
Alignment:
Q  18 cagggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||  ||| ||||||||| ||||| ||||| |||||| ||| |||||||  || ||||||||||||||||| |||||||||||    
T  13856251 cagggcacttgcccgggctccgggccaaatttttttcaattt-cttgtgtaaatccctatgaatttcttatataaatccctataaatt 13856165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 36539775 - 36539698
Alignment:
Q  27 cgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  || | |||||||||||||| ||||||||||||    
T  36539775 cgcccgggctccggcctaaattttatgcaattt-cttatgtaaatccctataaatttcttatataatcccctataaatt 36539698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 40845918 - 40845979
Alignment:
Q  43 caaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| ||||||||||||| || |||||||  || |||||||||||||||||||||||||||||    
T  40845918 caaattttttgcaatttt-ttgtgtaaatccctatgaatttcttatataaacccctataaatt 40845979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 44994958 - 44995023
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccct 98  Q
    ||||||||| ||||| |||||||||||| ||| |||||||  || ||||||||||||||||||||||    
T  44994958 gggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccct 44995023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 3178841 - 3178769
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||| ||||| |||||| ||| |||||||  || ||||||||||||||||| | |||||||||    
T  3178841 gggctccggcccaaatttttttcaattt-cttgtgtaaatccctatgaatttcttatataaatctctataaatt 3178769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 19649362 - 19649434
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||| |||  |||||| ||||| |||||||||||  || |||||||||||||||||||| ||||||||    
T  19649362 gggctccggcacaacttttttgtaattt-cttatgtaaatcgctatgaatttcttatataaacccttataaatt 19649434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 46685779 - 46685845
Alignment:
Q  37 ccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||| ||||||||  ||||||||||||||  | || |||||||||||||||| ||||||||||    
T  46685779 ccggcccaaattttttgca--tttcttatgtaaatccccctaaatttcttatataaactcctataaatt 46685845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 50663256 - 50663200
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||||||| ||| |||| |||||||||||||||||| ||||||||    
T  50663256 tttttgcaattt-cttatgtagattcctctaaatttcttatataaacccttataaatt 50663200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 5391570 - 5391523
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||||||  || |||||||||||||||||||||||||||||    
T  5391570 tttcttgtgtaaatccctatgaatttcttatataaacccctataaatt 5391523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 39352321 - 39352260
Alignment:
Q  42 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||||||||||| ||||| ||||||||||| ||||||||||||||| | |||||||||    
T  39352321 ccaaaatttttgcaattt-cttat-taaatttctctaaatttcttatataaatctctataaatt 39352260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 48206962 - 48206920
Alignment:
Q  62 ttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  48206962 ttatgtaaattcctctgaatt-cttatataaacccctataaatt 48206920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 27642798 - 27642726
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||| || |||| |||||||||||| |||||||||||   | ||||||||||||||||| || ||||||||    
T  27642798 gggctcctgctcaaattttttgcaattt-cttatgtaaatccttttgaatttcttatataaatccttataaatt 27642726  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 23467528 - 23467556
Alignment:
Q  77 tgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||||||||||||||||||    
T  23467528 tgaatttcttatataaacccctataaatt 23467556  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 10115298 - 10115222
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattagac 109  Q
    ||||||||||||||  ||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||    
T  10115298 gggctccggcccaatttttttgcaatttt-ttatgtaaattcctctggatttcttatataaaccccaataaattagac 10115222  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 36769067 - 36769138
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||||    
T  36769067 ctccggcccaaattttttgcaattt-cttatgtaaattcctctgaatttcttatataaacctctatgaattag 36769138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 27916278 - 27916206
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| ||||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||    
T  27916278 gggcttcggcctaaattttttgcaattt-cttatgtaaattcctctgaatttcttatataaactcctataaatt 27916206  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 38397748 - 38397664
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  38397748 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 38397664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 8456943 - 8457025
Alignment:
Q  22 gcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| |||| ||||||||||||||| ||||| |||||| |||||||||||  || |||||||||||||||| ||||||||||||    
T  8456943 gcactcgcccgggctccggcccaaatttttttcaattt-cttatgtaaatccctatgaatttcttatataaccccctataaatt 8457025  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 6257388 - 6257472
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || ||||||||||||| |||||||||||||||    
T  6257388 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatacaaacccctataaatt 6257472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 23218635 - 23218551
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||| ||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  23218635 gggcactcgcccgggttccgggccaaagtttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 23218551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 37169023 - 37169095
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| ||||||||||||| || |||||||  || |||||||||||||||||||||||||||||    
T  37169023 gggctccgggccaaattttttgcaatttt-ttgtgtaaatccctatgaatttcttatataaacccctataaatt 37169095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 39862465 - 39862549
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| | ||||||| ||||  |||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||    
T  39862465 gggcactcgcccgagctccgggccaatttttttgcaattt-cttgtgtaaattcctatgaatttcttatataaacccctataaatt 39862549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 42119735 - 42119688
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  42119735 tttcttatgtaaattcctctgaatttcttatataaacctctataaatt 42119688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 614398 - 614454
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||    
T  614398 tttttgcaattt-cttatgtaaattcctctgaattttttatataaatccctataaatt 614454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 29491412 - 29491475
Alignment:
Q  40 gcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  29491412 gcccaaatcttttgcaattt-cttatgtaaatttctatgaatttcttatat-aacccctataaatt 29491475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 10081258 - 10081211
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||    
T  10081258 tttcttatgtaaatccctatgaatttcttatataaacccctataaatt 10081211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 33188330 - 33188383
Alignment:
Q  49 ttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaa 103  Q
    ||||||||||| ||||||||||||  ||| |||||||||||||||||||||||||    
T  33188330 ttttgcaattt-cttatgtaaattcatctaaatttcttatataaacccctataaa 33188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 33271263 - 33271332
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||  ||||| |||||| |||||||||||| |  ||||||||||||||||||| |||||||||    
T  33271263 ctccggcccaatttttttacaattt-cttatgtaaattccgttgaatttcttatataaacctctataaatt 33271332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 3341111 - 3341182
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaa-tttcttatataaacccctataaatt 105  Q
    ||||| |||||||| ||||||||| ||||||||||||| ||||||||| ||| |||||||| ||||||||||||    
T  3341111 ggctctggcccaaattttttgcaa-tttcttatgtaaa-ttctctgaatttttttatataatcccctataaatt 3341182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 16618560 - 16618632
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| ||||| |||||| ||| |||||||  || |||||||||||||||||| ||||||||||    
T  16618560 gggctccgggccaaattttttacaattt-cttgtgtaaatccctatgaatttcttatataaactcctataaatt 16618632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 6174882 - 6174820
Alignment:
Q  34 gctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccc 97  Q
    ||||| ||||||| |||||| ||||| |||| |||||||  |||||||||||||||||||||||    
T  6174882 gctccagcccaaattttttgtaattt-cttacgtaaattcttctgaatttcttatataaacccc 6174820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 10052490 - 10052564
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    ||||||||||||||  ||||| |||||| |||||||||||  ||||||| | |||||||||||  |||||||||||    
T  10052490 gggctccggcccaatttttttacaattt-cttatgtaaatccctctgaactacttatataaacgtctataaattag 10052564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 11856408 - 11856361
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||  |||||||||||||||||||| | |||||||||    
T  11856408 tttcttatgtaaatcgctctgaatttcttatataaatcactataaatt 11856361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 29790218 - 29790281
Alignment:
Q  41 cccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| ||||| |||||| ||||||||||||  | |||||||||||||||||||  ||||||||    
T  29790218 cccaaaatttttacaattt-cttatgtaaattcttatgaatttcttatataaacctttataaatt 29790281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 33934347 - 33934431
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||| | ||||| |||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||    
T  33934347 gggcactcgcccgggctccaggccaaattttttgcaattt-cttttgtaaattcctatgaatttcttatataaacccctataaatt 33934431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 35806932 - 35806860
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| |||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||    
T  35806932 gggctccgggccaaattttttgcaattt-cttgtgtaaatctctatgaatttcttatataaacccctataaatt 35806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 21525508 - 21525424
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| |||||||||  |||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  21525508 gggcactcgccagggctccgggtcaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 21525424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 22324746 - 22324662
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||| ||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  22324746 gggcactcgcccgggctccgggccaaattttttgtaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 22324662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 42072578 - 42072494
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||  |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  42072578 gggcactcgcccgggctccgggccaatttttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 42072494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 16818965 - 16819035
Alignment:
Q  34 gctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| |||||||| |||||||||||| ||| ||||||| ||  |||||||||||||||||||||||||||||    
T  16818965 gctctggcccaaattttttgcaattt-cttttgtaaatctccttgaatttcttatataaacccctataaatt 16819035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 16523244 - 16523172
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||||| ||||| |||||| | |||||||||  || ||||||||||||||||| |||||||||||    
T  16523244 gggctccggcccaaattttttacaattt-catatgtaaatccctatgaatttcttatataaatccctataaatt 16523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 16591369 - 16591437
Alignment:
Q  36 tccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||| ||| |||||||||||| |||||||||||||||  |||||||||||||||| | |||||||||    
T  16591369 tccggcctaaattttttgcaattt-cttatgtaaatttctaagaatttcttatataaatcactataaatt 16591437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 19334917 - 19334845
Alignment:
Q  36 tccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattagac 109  Q
    ||||||||||| |||||||||||| ||||| ||||||  | ||||||| ||||||||||| |||||||||||||    
T  19334917 tccggcccaaattttttgcaattt-cttatataaattcttatgaattttttatataaacctctataaattagac 19334845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 26021534 - 26021462
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||  ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  26021534 gggctccgtgccaaattttttgcaattt-cttttgtaaatccctatgaatttcttatataaacccctataaatt 26021462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 2824167 - 2824244
Alignment:
Q  27 cgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| |||||||| ||  || ||||||||||||| ||||||||||| |||| |||||||||||||| ||| ||||||||    
T  2824167 cgcccgggctccgacctgaattttttgcaatttt-ttatgtaaattcctctaaatttcttatataaccccttataaatt 2824244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 10112169 - 10112113
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||| | ||||||||    
T  10112169 tttttgcaatttt-ttatgtaaattcctcttaatttcttatataaactcttataaatt 10112113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 2271317 - 2271259
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||||||||| |||||||||||    |||||||||||||||||||||||||| |||||    
T  2271317 tttttgcaattt-cttatgtaaatcatgctgaatttcttatataaacccctatatattag 2271259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 42014000 - 42013938
Alignment:
Q  42 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||||||||||| ||| |||||||  || |||||||||||||||||| ||||||||||    
T  42014000 ccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaactcctataaatt 42013938  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 43282866 - 43282913
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||||  ||||||||| ||||||||| |||||||||||    
T  43282866 tttcttatgtaaattcttctgaatttattatataaatccctataaatt 43282913  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 24065394 - 24065339
Alignment:
Q  49 ttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||| || || ||||| ||| |||||||||||||||||| ||||||||||    
T  24065394 ttttgcaattt-ctcatataaatctctatgaatttcttatataaactcctataaatt 24065339  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 29846592 - 29846508
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  29846592 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 29846508  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 42769736 - 42769820
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  42769736 gggcactcgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 42769820  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 14942029 - 14942106
Alignment:
Q  27 cgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||| ||||||||| ||||| |||||||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  14942029 cgcccgggctccgggccaaattttttgcaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 14942106  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 19181676 - 19181614
Alignment:
Q  42 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||    
T  19181676 ccaaattttttgcaattt-cttgtgtaaattcctatgaatttcttatataaacccctataaatt 19181614  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 14539703 - 14539768
Alignment:
Q  41 cccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaattag 107  Q
    |||||| |||||||||||| ||||||||| || ||||||||||||||||||||  ||||||||||||    
T  14539703 cccaaattttttgcaattt-cttatgtaatttcctctgaatttcttatataaattcctataaattag 14539768  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 43139882 - 43139813
Alignment:
Q  35 ctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| ||||  |||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||    
T  43139882 ctccggtccaatttttttgcaattt-cttatgtaagttcctcttaatttcttatataaacccctataaatt 43139813  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 40277278 - 40277350
Alignment:
Q  32 gggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||| ||||| ||||||||||||| ||||||||||  || | ||||||||||||||| |||||||||||    
T  40277278 gggctccgggccaaattttttgcaatttt-ttatgtaaatccctataaatttcttatataaatccctataaatt 40277350  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 14186417 - 14186500
Alignment:
Q  21 ggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||| |||| | ||||||| ||||| |||||| ||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  14186417 ggcactcgcccgagctccgggccaaattttttgtaattt-cttgtgtaaatccctatgaatttcttatataaacccctataaatt 14186500  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 40780169 - 40780121
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaac-ccctataaatt 105  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  40780169 tttcttatgtaaattcctctgaatttcttatataaacaccctataaatt 40780121  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 41674721 - 41674768
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||    
T  41674721 tttcttatgtaaatctctctgaattttttatataaacccttataaatt 41674768  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 3956722 - 3956638
Alignment:
Q  20 gggcacacgccggggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||| |||| |||||||||||||||   ||| ||||||| ||||||||||  || ||||||| |||||||||||||| ||||||    
T  3956722 gggcactcgcccgggctccggcccaaaaaattttcaatttt-ttatgtaaatccctatgaatttattatataaacccctgtaaatt 3956638  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 6318448 - 6318520
Alignment:
Q  33 ggctccggcccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||  |||||   | ||||||||||||||  || ||||||||||||||||| |||||||||||    
T  6318448 ggctccggcccaatttttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaatt 6318520  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 2888154 - 2888107
Alignment:
Q  58 tttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||||| ||| ||||||| |||||||||| ||||||||||    
T  2888154 tttcttatgtaaatctctatgaattttttatataaactcctataaatt 2888107  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 28321709 - 28321765
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| ||||||||||||   |||||| |||||||||||||| ||||||||    
T  28321709 tttttgcaattt-cttatgtaaattctcctgaatatcttatataaacccttataaatt 28321765  T

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Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 20837 - 20893
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||    
T  20837 tttttgcaattt-cttatgtaaattcctctgaatttcttatataaagctctataaatt 20893  T

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Target: scaffold0079 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 54641 - 54585
Alignment:
Q  48 tttttgcaattttcttatgtaaatttctctgaatttcttatataaacccctataaatt 105  Q
    ||||||||||||| || |||||||| || ||||||| ||||||||| |||||||||||    
T  54641 tttttgcaatttt-ttgtgtaaattcctatgaattttttatataaatccctataaatt 54585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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