View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_low_7 (Length: 329)
Name: NF19638_low_7
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 22016513 - 22016815
Alignment:
| Q |
19 |
tgtgtttattaatcaaggagtgtaacatagccactttgctacacttctaactttggatttgctataaggttacttttgtaagtgctgctttgtgatgact |
118 |
Q |
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| T |
22016513 |
tgtgtttattaatcaaggagtgtaacatagccactttgctacacttctaactttggatttgctataaggttacttttgtaagtgctgctttgtgatgact |
22016612 |
T |
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| Q |
119 |
tagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacgctatttaccgaagcctcctcagatgaattgtctggat |
218 |
Q |
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| T |
22016613 |
tagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacgctatttaccgaagcctcctcagatgaattgtctggat |
22016712 |
T |
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| Q |
219 |
gaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgtaatgaagggacagataataatgaaaataatgctgatg |
318 |
Q |
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| T |
22016713 |
gaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgtaatgaagggaaagataataatgaaaataatgctgatg |
22016812 |
T |
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| Q |
319 |
atg |
321 |
Q |
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| T |
22016813 |
atg |
22016815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 22016830 - 22016864
Alignment:
| Q |
285 |
gaagggacagataataatgaaaataatgctgatga |
319 |
Q |
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| T |
22016830 |
gaagggacagataataatgaaaataatgctgatga |
22016864 |
T |
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