View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19638_low_9 (Length: 323)
Name: NF19638_low_9
Description: NF19638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19638_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 43142215 - 43142497
Alignment:
| Q |
17 |
aaaaaggtctcatatgtggataaaaagacccatattttgaatttgtttttagacctgtttgaaaataaaaaattgttcagacggacctttaaggacaata |
116 |
Q |
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| T |
43142215 |
aaaaaggtctcatatgtggataaaaagacccatattttgaatttgtttttagacctgtttgaaaattaaaaattgttcagacggacctttaaggacaata |
43142314 |
T |
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| Q |
117 |
ttgatgtatattgataatgtaagaaccattaacgaatatacaaat-tgccaattaaatatttggatgagagaataacttacgaaacttttataggtttta |
215 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142315 |
ttgat----------aatgtaagaaccattaacgaatatacaaatgtgccaattaaatatttggatgagagaataacttacgaaacttttataggtttta |
43142404 |
T |
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| Q |
216 |
atttaaagactaatttgaagagtgtgctaattcaattaccaaattaagtgtctgttcctttgtgggcaggtattacattacaaagcttgttgcctttg |
313 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43142405 |
atttaaagactgatttgaagagtgtgctaattcaattaccaaattaagtgtctgttcctttgtgggcaggt-----attacaaagcttgttgcctttg |
43142497 |
T |
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