View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19639_low_1 (Length: 695)
Name: NF19639_low_1
Description: NF19639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19639_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 444 - 677
Target Start/End: Complemental strand, 39743864 - 39743629
Alignment:
| Q |
444 |
cgaagtaaaattattttactagctgaaaatatctatacaattactggcattgtgattagattcatgaatcgtg-tatgagatgtgattggtagttggaac |
542 |
Q |
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| T |
39743864 |
cgaagtaaaattattttactagctgaaaatatatatacaattactggcattgtgattagattcatgaatcatgttatgagatgtgattgttagttggaac |
39743765 |
T |
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| Q |
543 |
acattttttggtccaacaccttctc-nnnnnnngtttaggtacaattgtcctacactttttcacactctctttgatgcttaaaatttatgagttcttttc |
641 |
Q |
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| T |
39743764 |
acattttttggtccaacaccttctcttttttttgtttaggtacaattgccccacactttttcacactctctttaatgcttaaaatttatgagttctttta |
39743665 |
T |
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| Q |
642 |
atttataggactccatatgaagagtatattacaata |
677 |
Q |
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| T |
39743664 |
atttataggactccatatgaagagtatattacaata |
39743629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 145 - 363
Target Start/End: Complemental strand, 39745006 - 39744796
Alignment:
| Q |
145 |
tgatccttttatgggaaggtaatgacttttcaagtgtgaaagcaagttggagatgagatcctattcggtatgtgtatggtatggccctttacttaatcaa |
244 |
Q |
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| T |
39745006 |
tgatccttttatg--aaggtaatgacttt-caagtgtgaaagcaagttggagatgagatcctattcggtatgtgtatggtatggccctttacttaatcaa |
39744910 |
T |
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| Q |
245 |
tggatgaaccnnnnnnngttgaaattagctttttcatttttgttcttttgatgcttaagtaacggtcagtgttcattcataataatcaatcatgcacttt |
344 |
Q |
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| T |
39744909 |
tggatgaaccaaaaaaagttgaaattagctttttcatttttgttcttttgatgcttaagtaacggtcagtgttcattcataat----aatcatgcacttt |
39744814 |
T |
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| Q |
345 |
ttgtttttgacaatatacg |
363 |
Q |
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| T |
39744813 |
tt-tttttgacaatatacg |
39744796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 39745150 - 39745072
Alignment:
| Q |
1 |
agcatcaggatgagcttcacgtggatttggaacaacacggtttgccatgatcacatagcaaagaacacaatacaacaca |
79 |
Q |
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| T |
39745150 |
agcatcaggatgagcttcacgtggatttggaacaacacggtttgccatgatcacatagcaaagaacacaatacaacaca |
39745072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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