View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963R-Insertion-10 (Length: 453)

Name: NF1963R-Insertion-10
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963R-Insertion-10
NF1963R-Insertion-10
[»] chr4 (1 HSPs)
chr4 (9-453)||(51112520-51112964)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 51112520 - 51112964
Alignment:
Q  9 tctttggctttctgtgcagccttctgagcagcattagtagcatattctttggccttctgtgcagcactacctgtgtattctccagccttatgaatagctt 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112520 tctttggctttctgtgcagccttctgagcagcatcagtagcatattctttggccttctgtgcagcactacctgtgtattctccagccttatgaatagctt 51112619  T
Q  109 caccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcataactttcgtcagcagcataatgtttggtcttttcagaagcatcagtggcata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51112620 caccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttcgtcagcagcataatgtttggtcttctcagaagcatcagtggcata 51112719  T
Q  209 atctctgattttcttagaagcatcccaagcatagcctttggttttctcagtagcatcatgggcatggtcactggctttttgagcagtttccttggacttg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112720 atctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagcatcatgggcatggtcactggctttttgagcagtttccttggacttg 51112819  T
Q  309 tgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatattcagaggctttatcagtggtggtgctgtccttatctttgtctttga 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112820 tgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatattcagaggctttatcagtggtggtgctgtccttatctttgtctttga 51112919  T
Q  409 agccaaggccttcggtgattttctctttggcccactcagtccatg 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51112920 agccaaggccttcggtgattttctctttggcccactcagtccatg 51112964  T

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