View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963R-Insertion-11 (Length: 620)
Name: NF1963R-Insertion-11
Description: NF1963R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963R-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 9 - 620
Target Start/End: Complemental strand, 42183142 - 42182522
Alignment:
| Q |
9 |
aaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccgccattatcaatgatagcattagcacctaga |
108 |
Q |
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| T |
42183142 |
aaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccaccattatcaatgatagcattagcacctaga |
42183043 |
T |
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| Q |
109 |
gcagaagaatcacccccaaaagacatgttgtatgttgtgggaccataaccatcagca------gcagaagcagaagaagaatcatgattatgaaaaaatg |
202 |
Q |
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| T |
42183042 |
gcagaagaatcacccccaaaagacatgttgtatgttgtgggaccataaccatcagcatcagcagcagaagcagaagaagaatcatgattatgaaaaaatg |
42182943 |
T |
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| Q |
203 |
aacggtggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttggnnnnnnnnnnaggttccttgtcttgaacgcgaaactc |
302 |
Q |
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| T |
42182942 |
aacggtggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttggttttttttttaggttccttgtcttgaacgcgaaactc |
42182843 |
T |
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| Q |
303 |
acccataactaattaaaatgaaaccaagcacactttggtgaaaaaagaaaacaactttgtttgttgtaatgttacttacttttacttgttatattatacc |
402 |
Q |
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| T |
42182842 |
acccataactaattaaaatgaaaccaagcacactttggtgaaaaaagaaaacaactttgtttgttgtaatgttacttacttttacttgttatattatgcc |
42182743 |
T |
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| Q |
403 |
gatagtaaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatgaaatgataatgaatatg |
502 |
Q |
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| T |
42182742 |
aatagtaaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatgaaatgataatgcatatg |
42182643 |
T |
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| Q |
503 |
atatgataatatat---agtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggagagatttatgattgtgtt |
599 |
Q |
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| T |
42182642 |
atatggtaatatatagtagtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggagagatttatgattgtgtt |
42182543 |
T |
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| Q |
600 |
atgggttgccgccattctcgg |
620 |
Q |
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| T |
42182542 |
atgggttgccgccattctcgg |
42182522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 618
Target Start/End: Complemental strand, 17366217 - 17366154
Alignment:
| Q |
555 |
tgtaaagaagacaggtgttggaatggagagatttatgattgtgttatgggttgccgccattctc |
618 |
Q |
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| T |
17366217 |
tgtaaagaggacagatgttggaatggagagatttaagattgtgttatgggttgccgccattctc |
17366154 |
T |
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